RnoINT0017766 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150547467-150550197:-
Coord C1 exon
chr4:150550152-150550197
Coord A exon
chr4:150549162-150550151
Coord C2 exon
chr4:150547467-150549161
Length
990 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GGTGAACTCTTTCTTTCCAGCCA
3' ss Score
5.28
Exon sequences
Seq C1 exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
Seq A exon
GTATGTGTCAAAATGTATGAGTTAAGATTAGGTTGACTAATTTTTAAAATAAATTATATTAAATGACATTTTCCTTGTTCAGTGAGTAGATTTTACAGTAAGTGTTGCTTTACACAAAATTAAAGACATGTTTCCTTTGGGGATTAATTCATCAAGTGTTTATTTCATTTGAGAACTTCATAGAAGTACACTGCATTAGCATCATTCCCACGTCTACCCTGCCTCCGCCTCCACCCATGTTCTCCCTCCCCTCTCCTCAAATTCCTGGCCTCCTCTCATATATGCATCCTGTAGGCCCAGTTAGTGTTGCCCTTAATTGCCTGTGCTCAGGACTAACCACTTAGGAACAGGGTCTCATCCTTGAAAAAGACTGGTTCTCCCTCTCCCGGCAGCCACTGCCTGCCTGTAGCTCTTCATCTCAGGGCCACTCTGTCGGTTGTGCTGAGCAAATTGGATCCTACGCAGGAAGTCATTTCTGCATGTGTGTCTCGCAGGGTGCTGCCTTCTCCCTGCAGCGTCAGGTTTCTCACTGACGTCTGGCCCACTTGGAGCTGATGTGCAGGGTGAGGCAGCAGAATCTAGTTTCCTTCCACCTGTGGGCCTCAGCCTTCCCCGCCCCACTTGTCAGAGACGTATGCTTTCCTCCAGCGCATGGTTTTAGAATCTCGTCAAATACCAGGCAGCCATGAATATGTGGCTATCGTGGTTCCAGTGGCGTTCTGCTACAGTGGTCTGCGTGCCCGTTTGTGTGCCAGGGCCATGCTGTTTTCAGGACCATGGCTCTGTGATGTAACCTCTACGTGATTGTCTCCTCTTGTTCCTGTGCTTGTTACTGTAGCTTTGCACACGACGGTGATAATTAACTACGCACCCGCAAACAAGTTAAATCTAGTCATGATTGAGCACTTCGGTTCCATGTGCGTCTCACCAGTTCCGTTTCCGCTCTGCTTCCGCCTTGTGCTCCGTTAACGGTGAACTCTTTCTTTCCAG
Seq C2 exon
CCACTGCTGAACTTGAATCTGAGTTCTGCAGAGTTTCTCCCCTCGGGTCTGCTACCAAACCCGGCCAAGATCTACTCTCAGAAGCATCGCAAGAATATATAGACATTTTAAAGAAAAAATACATGATCTGCTGAATGTAAAAAGAGAAAAAGGAAGAAAAGGCATGAGGTGGAAGTGGACCGTTTGGGAGGAGGACCACAGAAGATAAAGGGCATGCGCCATGTGTGTCCGAAATGTCTCAACGCCCTGGCTGTGGTGGCACGTGTCTTCCACTCCAGCACTTGGGAAGCAGAGGCAGGTAGATCTCTGAATTCAAGGACAGTCAGGGCTACATGTCTTACACAGAAAAATAAAGTCATAATGAACCAACTATCTTATACAAATAATACAAGTTAATATATGTGATCTAAAATATAACATTGTGGGCTGGAGAGATGGCTCAGTGGTCAAGAGCTCCTATGGCTCGTCCATAAGTCCTGAGTTCAATTCTCAGCAACCACACAGTGGCTCACAACCATCCGTAATGGGATCTGGGTTACGTGCAGATAGAGCACTCATATACAAAAAAATAAATAAATCTTTAAAAAAGAAAACAAAGATATGAACATTTATTAAAGTAAAACATTATATTTATTAAACTGTTTATATATTTTAATTGTAATAACTGTATGACTTGAAAACACAAGTGAAAAATGTTTTTGTCATTCATACTAGAAATTAATATAATTAATATATTTACCTGGTTTTTGGTAGTCTTACGCAGATTTTGCAAGTATTATTAAACCAGTATTACAAACTTTTACATACGAAAACACCGTAAAGCAAGTGTTTAAACAACCAGGATACTCGGTGGGAAATATCTTTGTGGTTATATTTTTATCACTGTGTGTAGGCCAAAAGATTTAGCCAGTCATTGGTTCTGTATGCTGCTGCCTTAGCCACTGTTAATGTTTTAAATGTTTCACAGCCATGGTATCACCGTGAAACTTAACTTTAAGCACTGATAGTTCTTGATCCTGTGGAAAAGGCTTTCCACTCGTCTGTTTATTCATTTGCTTGTTCATCCTTGATAATTTTTTAAGTCATAAAATTAGAAGTTCAAATAATTCTCCTCTCTTCTGAACCCGTTGAGAGAGCCTTGCTGCCATCCATCGTCATCCTTGACTATTTTAGTGTTTATTTTAACGGACAACCCTCTAAGTAACTGTAGTGGCCTTTGTGATAAGAAGGCTAACACTCCTAGATCCTAAAGTTTAATCCTCGGATTCCTTTCCAGTGTGGCTTCTTATCTACAGCGTCCTTTAATAAAGACTGGGCCCATTCAGACTGATGGGTCCCAGTTACTGACAGTTCATAGACTCCTTCAATCTGAAACATTGTTCAGTCTTTGCTTGACTTTCATGACCTTAAAACTTCAAGGAACAATTTGTGTACTATGTCCTTGAATTGAATTTTCTGTTTCGTTATGATTAAATCATGCATTCTTGGCAAAAGTATTACAGAGGTAATTTTTCTCATTTAATCCTATTATGTGATCTATAATACTGATTTTTCTCTGTTATTATGATGTTGATATTGATCACTAAAGCAGTTACTTACTGTTTTTCCTCTATATATTTACTTTTGTTTTGTAATAATTGTTTTGTCGAGAGATAATTTGTGACTGTAAATATCTGTTTCTTATCAAACCTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]