HsaINT0008664 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27293045-27295891:-
Coord C1 exon
chr10:27295846-27295891
Coord A exon
chr10:27294653-27295845
Coord C2 exon
chr10:27293045-27294652
Length
1193 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
TTCTTTCTTTTTCATTCTAGCTG
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATGCAGCAGGAGTTGGAAAAAAATATAACTAGAGAACTCAAAGAAG
Seq A exon
GTATGTTGCCAAACTTCATGAATTAAATTTAGATTAATTAATTGATTTCTGAAATAAATTGTAAATCGTGAGTGGGATCCCTTTCCATTGTTTGGCTAATAGATACTACATTAAATGTTCTTTCTTACACACATCTAATGAAAGATGTGAAAACATGAATATTCATAGTGAAGAGTATACTTACTTTGTCTCATTAATTCATCATGTTCCATAGCTTTAAAAAAACTCAAGAAATCTTTGCACCTCTTTTTTTTCCGGCTCTACACTTTCTTCACTTCTGCCATCCCCATAGAACTGTAGCCAGCATGCAGAAATTATTCTTAGAAAACAAAGACATCATCAACTTCTCAAGGTTATGGTGGTGATTTAAGGCCCAAAGACCCCAGACTCACTAGTAATATCTAGTCTGGAATTACAGTTCATAAGCAGTTGCTTGACAGGTGACATTTGAAATCTCCAGTCATTTACTTTGTCATTGGTTTCCCTTTGCCCTCAGGAGAAGTTCCAAATTCCTTAGCATGGAATAAAAATACCCACATCAATGTGGTCCTTGTGACGTTATTCAACCTTATTTCTCACCCCTTGCTGTTCTTCGGGCCCCTTTGCTCTGGCATCCAGCCACCCTAGACCACGTGGAATTCCACAGGGAGCTTCCTCAGCTCCAGCTCTTGGCATTTGCTTCTTCCTTCCGTCTGGCATATGTTTTCCTTGTACTTCAGGTATCAGTCTACATATTGCCTCCATCAAAAAGCCTACGTTATTGACTCAGAACTGGGATAGGTGTCCCTTCTGTGTGTTCCAGTAGTGCCCTGTCTTATACCTGTCATGATATCTGTGACTTTGTATGGAAATTGTATGTTTGTCTGTTTTTTTCAGATTATAGCATATGTTTGTTAGAGGTGGATCATATCATCTTCATCTTGTAATTCTAGTGCTTACTTTGCTCATGGTTGTTGAATAAATGAATGAAGAGTGAGAAAGCCAGAAGCTCTGATATTTAACCACAAGGATAATTAATTCAGTGTGCAACCATGGGCAAATTATATTTAATAGTAATATTGTATAATAGTTGTGCATACATATTTTTCTTTCTTATTAATACTGACAAAATTCTCAACTCTTTTACTGACTTCCACTTAGTTAACTATGAAATCTTTTAGGTAAGGAATATAATTCTTTCTTTTTCATTCTAG
Seq C2 exon
CTGCTGCTGAATTGGAATCTGGATCAATAGCTTCCCCTCTAGGGTCTACTGATGAGTCAAATCTAAATCAAGATCTAGTTTGGAAAGCATCAAGAGAATATGTACAGGTTTTAAAGAAAAATTATATGATCTGAAAGATAAGATTTTATTACTGGGCTGTTTATGTGACATTTTGTTTCTCATTAAATATTAATATATGACATGTAAAAATATTAAAGGAACGTATTTTTGTATCATATATGTCAGATCAAAATTTATATAGTATTTTAAACAATGTTACTTGGCTTCTTTAACTTTTAAGTGGATTTTGCCAATGAAAACCAGGAATATTGAGTTTTACATACTCAAACTGCCCAAATGTGAGCTGTTTAAACAGCCAAACCACTAAGTTGTCATTAATACTTTAGTGCAGTTAATTGATGGCTTATTTGTATTTTGTAATTTTTATCACTATATGTAGTGGTAGATGTCTAATTGGACTTAGACATCATTTTGTTGTGCAGGAACTGTGGTCATTGTTCATGTTTGGATGTATTACAATTGTTACAGTGCCATCAAATTTACATAATTTTAATTTTAAGCACTGATTTATATAGCTGTTCTCAGGGAGAAACAAGATTTGCCTGATTCACCTTTTCTGTTTGTTTATTTATTTTTAATTAACCTTTTGGAAATAGCCTTCAGTTTAGAGAAAATTTCGAAGTTTTAGTACAAAGACTTTCTCCTCCGAACAATTTGAGAGTAAATTGCTGACATTATGTCATCACCCCTGATTACTTTAGTGGGCATTCCTACAAGTCAGGACATTCTACATAACTACAGTGCAAACCTTGCAATCAGAAAGTCAACATTAATACATTCTAGTTTGTTACTTCTCTGTAATGTCCTTTATAGCAAAAGGATCCCATTCTAATCCATGGCTTGTATTTAGTTGTTGTATCTGTTAGATCTTTCAGTCTGGAACAGTTCCTCAGTCTTTCCTTGACCTTCATGACCTTGAATATTTTGAAGAGTAAAGTCTGGTAATATAAGAATGTCCCTCAATTGGGTTTCATGGTGATTAGATTTAGATTATATGATTTTTTGGCAGGAGTATCACAGAAGTGACCCAGTGATCTTCTCATTGCATCTTACCTGTGACCCTACAGTTTTGATTTGCCCTGTTACTGGTAATGTTAGCATTGATCACTAACAGTGGTATCTGCTGAATTTCTCCTCTGTAATGTTATTTTTTCACCTTGTGGTTAATTAGTATTTTACAGGGAGGTAATTTGAGACTATGTACATATCTCTACTCCCCATCGAACCCTCAATTTATTCATTTGCTTGTATCAAATAAACCATGGATTCATGGTTTATTTTATTCAGTGAGTTATAATTCATTAATATTGTTATTAAAAATTTGTTTTTCTTTTAAGAAATGTTATATTTTGACAACTTCAGACTTACAGAAAGATTATAAGAGGTAGTACAAATAATTTTTGGATATTATTCCCCAAATGTTAACATTTTACTGCATTTACTTTATCCTTTCTCCCCCTTCTCCTCCTGTCTTTCTAGATGAATATGAATATAGGTACTTAATACAGATTTTTTTTCTAAACTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.602 A=NA C2=0.336
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGCAGGAGTTGGAAAAA
R:
CCACTTAAAAGTTAAAGAAGCCAAGT
Band lengths:
350-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)