Special

MmuINT0015561 @ mm9

Intron Retention

Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118452582-118455789:-
Coord C1 exon
chr6:118455744-118455789
Coord A exon
chr6:118453175-118455743
Coord C2 exon
chr6:118452582-118453174
Length
2569 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ATATATCCCTTTCTTTCCAGCTA
3' ss Score
8.2
Exon sequences
Seq C1 exon
ATGCATCAAGAGTTGGAAAAAAGTATAAATAGAGAACTTAAAGAAG
Seq A exon
GTATGTGCCAAAATTTATGAATTAAGGTTAGATTGACTAATTTTTAAAATAAATTATAAGTATTACATGACCTAATTTTCCTTGCTCAATGAATGGATTTTACAGTAAGCATTATTTTACACAAAATTAAACATATGAAGGTATTTCCTTCGGAGTTTAATTCAGCAAATGTTTGTTTCATTTGAATACTTCATATATAAGTACACTGCATTAGCGTCGCTTCTGCCTCTACCCTGCCTCTAATGCCACCCACGTTCTCCCTCCCCTCAAATTCATGGCCTCTTCTCATGTATGCAACCTGTAGCCCAGTTAGCATTGCCCTTGCTTGCCTGTGCTCTGGACTAACCACTTAGGAACAAGGTCTCATCCTTGAAAAAAGAACGGTTCTCCCTTTCCCAGAAGCCATCGCCTGTCTCTAGCTCTTCATCTCAGGGTACGGCTGCCTTAGGTAAGGCTCCTGTTGCTGTGATAAAGAACATGACGAAAGTGACTTGGGGAGGAAAGGGTTATTTCATCCTACAAGTCTGTTGCTGAAGGAAGTCAAGTCAGGAACTGGGAGTGAGGAGCTAAACAGAGGCCATGGATGAAGGCCACCTACTGACTTGATGCTTGCAGCCTGTTCCCAGATAAACTGTGTCATTTTTATACCACCTCCCCACCCCCCAAAAAAAGCCAAGTACACGCTTTGGATTTTTCCTCTACCCTTGTAGGTATGCAGATTGGTGTGGTCTTTGGAGGTAATGTGGAAGCAGTCATACTGTTGGGAGTTCACGGTTCTGTTCCATGATGTGTCCTGCACTAAGTGTAGGCTTGTGACAGAGGTGTTCTGTTTGGTGATCGGCACCACACAGTCACTTGTTCTTTGATTTTGACCAGTGCTGGTCTCTGTGATAGTCTCCATGTGCTCACAGATGAGAGCTACACATATCTAAGGCTATGAAGAATGAGAAATTTCAAAGGAATGTGAAAAGTCTTACTTTAATGACATGATAGTGTTGGGTTCTCCTCTAAGGTCTGAGGCCTGTCCAGCCACAGTTTCTTGGCTAGTTTATAATATCAGGCATGAATTCCCTCCTGTTGAGTGGGCTTTAGGTTCAGTTAGACACTGTTGGTTACCCCCAAGGAACAAGGGCCACTGTTGCATTATTGGGGTATCTTGCCTGTCCAGTTGTGGTTCTCTGGCTTTACAGCCTGGTAGAGTTAACTTCCTCCCTCGGCAGCTTATCCCAGACCTCCTAACACTGCGTGCTGGCCTCTGGGAGGAGCTCTCTGGTCAGATCCAACTTCTTAGTCCTTGTCCTAAGTGTCCAGTGTCTTTGGCAATAGGGCTTTACCATCAACCTCTACCAGGTAGCCAAGGCTACATCAGCGATATACATATCGTTGTGGGAGTCCCTGGTACCCCCACAACCGTTCAGAAGGAGGAGTCTCCTGACTGTTACTGGAGTTTTTCATGGTTCCTGTCAGGAACATTGTAGCTTAAGTGGCATAACTTCCTTTAAGGTTTCCTACACAAATCTTTATACACACACATGTACACATACCCTACTCTTTGGCAAATATAAAATAATACAGTTCCCTGGGTCTGTATCACACAACCTCCTCCCGTGTTCCACTTCCTACTTCCTGTGGCCTGCATCCTGCTGTTATTCTCTCCATCCCCTCCAGCCAGTGCTCCCTTTGGACTTCTCTGGGCTTTGGTTCCATTGTTTAGAACTCTGTATAGATCCATAGTTCACTCTTAATTGAGTTATTGGTTTTCTTGATTCTTTGGTATTTATATATTCTGAATATTAATCTTCTGTCAGCTATACTAAGATTCTCTCCCATTCGAGAGGTTTCCTCTTTATCCGACTGTTCCCATTCCTGTATGGAAGTCTTTTGGTCTATGAGGCCACTCTGTCAGTTGTGCTGAGCCATCTGACGCCTGTACCGGAAGTCCTTTGTGCTGTGTGTGTCCTGTAGGGTGCTGCCTTGTGTTCTCCCAGCACTCTCAGGTTTCTCGCTGACGTCTCACCCGTGTAGAGCTGGTGTCATGCAGGCTGATACAGAAGAATTTAGTTTCGTTCCACGGGTGGACATCAGCTTTCCAAACACCATTAGTCAAAGAACTTCTCTTTCCTCCAGTGTGTATTTTTGGAATCTTGTCATATATCGGCAGCTATGAATATGTGGTCTTACAACATGGTCCCAGTGGCATTCTGCTCCACTGGTCCAAGTGCCTGTTTGTGTGCCGGGGCCATGCTGGTTTCAATACTCTTTGATGTCACCGCTATGTGATTATCTGCAGTGAACTGTATTGTCTCATCTTGTCATTCCTGTGCTTGTAACTGTAGCTTCGCACATGATTGTTGAAGAAACGAGTCAACAACACAGACACTTTGGTATTCACGATGATAATTAAGTATGCACCTGCAAACAAGTTAAATTCAGTCATGAGTGTGCACTGCAGTTTCATATGCAGATTACCAATTCAGTCTCAGCTCTTCTTCTGACTTGTGCTTTGTTAACTGTGAACTCTTGACATATAAATATATATATATATATATATATATCCCTTTCTTTCCAG
Seq C2 exon
CTACTGCTGAACTTGAATCTGAGTTCTGCAGAGTTTCTCCCCTGGGATCTGCTACTAAAGCAAGCCAAGATCAACTCTCAGACGCATCGCAAGAATTTATAGACATTCTAAAGAAAAAATATATGATCTGCTGAATTTAAAAAGAGAAAAAGGAAGAAAAAGTAGAAGTGGGACTTTTTGGGAGAGAGGATCAGAGAAGTTAAAGGGGCACGTGCTGTGTGTCTGAAATGTCTCCGTGGCCTGGGTGTGGTGGCACGTGTCTTTGACTCCAGCACTTGGGAAGCAGAGGCTGGTAGATCTCTGAATTCAAGGGCAGTCAGAGCTACATGTCTCATACTGAAAAATAAAGTCATAATGGAACCTACTATTTTGTACAAATAATACACATTAATATACATGATCTAAAATATAACATTTTGGGCTGGAAAGGTGCCTCAGGAGTTTGAGAGCACTGGCAGCTCTTCCCTAGGTCCTGAATTCAGTTCCCAGCATCCATATGGTGGCTCTAACCATCTATAATGTGATCTGGTGTCCTCTTTTGATGTGCAGGATTATGTGCAAATAGAACACTCATATTCATAAAATAAATCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.062 A=NA C2=0.045
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000108449





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000007971
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr10:27005724-27006916 
ALTERNATIVE
HsaINT0008664
(ANKRD26)
Human
(hg19)
chr10:27294653-27295845 
ALTERNATIVE
HsaINT0008664
(ANKRD26)
Rat
(rn6)
chr4:150549162-150550151 
ALTERNATIVE
RnoINT0017766
(Ankrd26)
Cow
(bosTau6)
chr13:17907375-17908495 
LOW PSI
BtaINT0018337
(ANKRD26)
Chicken
(galGal4)
chr1:24109080-24111474 
LOW PSI
GgaINT0109023
([1])
Chicken
(galGal3)
chr1:26135545-26137939 
LOW PSI
GgaINT0109023
([2])
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"