GgaINT0109023 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:26135499-26138404:+
Coord C1 exon
chr1:26135499-26135544
Coord A exon
chr1:26135545-26137939
Coord C2 exon
chr1:26137940-26138404
Length
2395 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTGTTTCTTTTCTCTCCAGCCA
3' ss Score
9.27
Exon sequences
Seq C1 exon
ATACGGAAGGAACTGGATGAAAAAATCACTAAAGAACTTGAACAAG
Seq A exon
GTAATGTGCTACTCTGATATCAGTGTTTTTAAGGAAGATGATGACTGTTCTTAACTTCTATGTAATTATTTTCAAAAGTTGTTAAGATCCTATTTGAAGCATGGTGTTTTTTTAATCTATCTAATTTAGAGTTTTAATGGAAAACTTCCTGCTTACCAATATACTGTTCAGAATGTTCTGCAGTTACTTTTGAGAAAAAGCACGGAGAACAAACCATCTCCCCCACACAGATACATTTGGCCTAAGCTGAAGTCACCTTTCATCCTCAGGCACAAACATCAAATGTAAAAAAAGCCCTGAAATAAGATTTTTATAGACTCCGGTCACCACATCTCTTTCTGCATACATTCACTGCATTCAACACTTCAAGAATACCATATACATTTTCTGGTGTTCTTGATTCTTGCTATCTCTTTTTCATTGCTTTTGTTTGTACCTCACATGTTGTTGTTGTAGTCATCTTTGGATAAACAAGAATTAGTAGAAAAGATAGACTTTCTTTAGGTAAAAATCATTCAGTAATATTCAGGCAAACACGGTGTGAATTGATTGCTTTTAATATACAGTGTAAAGCATGTTCTGTAAGACAAGGCCAGGTCTTCAGAGAGGAATTCCACCTGTTTCATAATTATCATTCTGCCAGAGTCACTGCTGCTGTGCCTAGAGCTATTTTGAAGCAGGGAGCCCTTGAGAGTCCAGCTGTTGCTTCACAGCTCTTCCAATTTGCCTGAATAGACAGAAACCCATTGCCCTGTATCCATTTGCATTTTCAAACATAATTACATGTCTAGGAGGAGCTGTAGTATTTGTTTGGTCGGGGGATCTTGTCTGAAAAAGGTTGATGGATGGAAGTACAGAAAATCTTTTTCTGCTTTCATTGAAGACGTATTCCCTTGGAGGAAAGAGGGTTTAGCCAGGGAAAGTTAAGAAGATGTCCTACAGATGGCTGTGTTAGGCTGAGCGACTTGTGGCTGGACTATAGTACAAAGGTGTTTGTATTTTCCAAATCCTGTCACTTTTGATCTGATCACAATGAATGTGGAAGCTGTTTTTTAGGAGTAGTGTTCTCAGGTCAGCATGGGGCTAAATTTACCACTGGTTTGAGCAAGTGTTGTTTGTGGATTCCCTGAAGAGGAGAGTTGTGGTCAATGGCTCAGTGTCCAAGTGGTGACCAGTGGCAAGTGGTGTTCCTCAGGGATCTGTGCTGGGATTGGTGCTATTTAACATCTTTGTAAGCGATATGGACAGTGGGATCAAGTGCATCCCATCAAGTTTGCAGATAACACCAAGCTGAGTGGTGCAGTTGACACGCTAGAAGGAAGGGATGCTATCCAGAGGGACCTGGACAGGCTTGAGAGGTGGGCATTGCCAACTTCATGAAGTTCAGTAAGGCCAAGTGCAAGGTTCTACAGCTGGGTCAGGGCAGTCCCAAGCACCGATTCAGGTTGGGTGGGCAAAGGCTTGAGAGCAGCCCTGAGGAAAAGGATTTACAGCTGTCAGTTGATGAAAAACTCAACATGAACCAGCAGTTTGCGCTTTCAGCCCAGAAGGCCAACCATATCCTGGGTCACATCAAGAGAAGTGTGACCAGCAGGTCAAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTCATGAGACCCCACCTGGAGTATTGCATCCAGTTCTGGGGCCCCCAATGCAAGGACATGGAGCTGTTGGAGTGGGTCCAGAGAAGGGCTACGAAGATGATCAGAGGGCTGGAGCACCTCCTCTGTGGGGTCAGGCGGGAGAGCTGGGGCTCTTCAGTCTGGAGAAGAGGAGGCTCAGGGGGGCCTTTTAGTGGCCTTCCAGTACCTGCAGGGGCCTACAGGAAAGCTGGGGAGGTACTTTTTATGATGGCATGTAGTGACAGCATGAGGGGAAATGTCTTTAAACTGGAAGAGGGTAGATTTAGGCAAGATACTAGGAAGAAATTCTTTACTTCTTAATGTAAGGGTGGTGAGACACTGGAACAGGTTGCCTAGAGAGGTTGTGCGTGCCCCCACCTTGCAGGCATTCAGGGCCAGGCTAGATGGGGCTTTGAGCTGCCTGGTCTAGAGGGAGGTGTCCCTGCATATAGCAGGGGGAGTGGAACTAGACAATCTTAAAAGGTCCCTTCCAGCCCAAACCATTCTATGATTCTATGACCTCTGGAATTTCTTTGTCTAGATTTAGAAGTTGTGTTGACTGATAATTGAATTTCAAAAAATGTTTCTTCCTTTGTGCCTATCCTTTTGATTTTTGTTTTCCTTGGAAGTTTTTTAAATCTGTCTCCAGAGTGTAGCCTGTTCAGTTACCAGTAATGTTTTTACAGTGACTTATTTGACTCAATCTACTGTAAAAGTAGTATCATGAATCTTGTTTCTTTTCTCTCCAG
Seq C2 exon
CCACTGCTGAACTTGAAACTGGATCTGCTGGAGCTTCTCCAATGGTATCTACTGATGGATCTTCAAGAAATCTCAATGTTGACCAGGATCCCCTTTGCAGAGCAATACAGGAGTACCGTGATGTTTTAACCAAAAATTATCTGATCTAAACAAAAATTCAAAGGGAGAAGTACTGGAAATCATTTTGTTTACATAGGATGTCTATGATTTCCCATCCTGCAGCTTAGATGTGGAAACATCTTTATTGCAGTTAGAATATAAATTCTAAATGTATTAAATAGGTGTCAAGCACTCTGCACTTACCTGTTGGTCACTGAGGTATAGTTGGTTTATTTTGCACTCAGAATAAGAACCATATCTATTTTTTGTTACTATCAGATTGAGTAATGTTGATTCTTGAGCTTCACAGAACTGTCAAAATCTTTTTGATGCATTATTTTGCTCCGCTCGTGTTCCATGTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(10.0=56.2)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]