BtaEX0000195 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77493884-77507298:-
Coord C1 exon
chr16:77507101-77507298
Coord A exon
chr16:77497572-77497754
Coord C2 exon
chr16:77493884-77493937
Length
183 bp
Sequences
Splice sites
3' ss Seq
GGAATTTCTCAATTTTTCAGTGG
3' ss Score
5.61
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
AGATTTTGTGTCAACCGCCTCCAGAAATTCAAAATGGAAAATACACCAATAGCCACAAGGATGTATTTGAATACAATGAAGTAGTAACTTATAGTTGTGATCCTTCAAATGGGCCAGATGAATATTCCCTTGTTGGAGAGAGCAAGCTTACTTGTATTGGAAATGGTGAATGGAGTAGTCAACCCCCTCAGTGTAAAG
Seq A exon
TGGTCAAATGTGTATATCCAGCCATTGAACATGGAACGATAGTCTCAGGATTTGGACCAAAATATTACTACAAAGCGACGGTTGTACTTAAATGCAATGAGGGTTTTAACCTTTATGGCAACAGTGTAGTTGTCTGTGGTGAGAACAGTACTTGGGAGCCCGAGCTACCAAAGTGTATTAAAG
Seq C2 exon
GACATCCCCCCCGTCCTACTGATGCATCACCCCCTAACGGTGCTGAGGGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397-'10-14,'10-11,11-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.006 C2=0.484
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.5)
A:
PF0008415=Sushi=WD(100=90.3),PF0248011=Herpes_gE=PU(12.3=16.1)
C2:
PF0248011=Herpes_gE=FE(22.2=100),PF041569=IncA=PU(8.3=26.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCAACCGCCTCCAGAAAT
R:
TAAACCCTCAGCACCGTTAGG
Band lengths:
244-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development