RnoEX0018690 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113797977-113811584:-
Coord C1 exon
chr13:113811496-113811584
Coord A exon
chr13:113805774-113805956
Coord C2 exon
chr13:113797977-113798018
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGCGGTTTTCCTCTTTTCAGTGG
3' ss Score
9.41
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
TTATTACATGGTTGGTATGTCAGTTCTACAGTGTGAGCTTAATGGCAACGGTGATGCATTCTGGAATGGCCATCCCCCAAGTTGTAAAA
Seq A exon
TGGTAAAATGTCCATTTCCAGTGCTACAAAATGGAAGACAGATATCAAGAACTGAAAAAAAATTTTCCTACCAAGCACTAGTGCTGTTTCAGTGTTTGGAGGGATTTTACATGGAGGGCAGTAGCATGGTGGTCTGTGGTGCTAAGAGCTCTTGGGAGCCCTCTATCCCACAATGTCTTAAAG
Seq C2 exon
GATATCCTAGTCCCCGTGAAGGAATATTTGGCCAAGAATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(46.7=90.3)
A:
PF0008415=Sushi=WD(100=90.3)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000057151fB2680
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTACATGGTTGGTATGTCAGTTCT
R:
CGAATTCTTGGCCAAATATTCCT
Band lengths:
130-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]