GgaEX1012101 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2631369-2633588:+
Coord C1 exon
chr26:2631369-2631575
Coord A exon
chr26:2632277-2632459
Coord C2 exon
chr26:2633400-2633588
Length
183 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTACATTTTTCAGTGG
3' ss Score
8.53
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GAGTTCCTTGTAAGCCACCTCCAAGTATAGCCAATGGGCGCTACACTGAAGCAGACAACTATGTTTATCAAACAACAGTAACCTATAGTTGTGACAATGTGCGCGCAGGAGAAAATCCCTTCTCGCTGGTTGGTTCACCTTCTATTTTCTGCACAGTTGATGAAAACTCAAATGGTGTTTGGAGTGGACCGCCTCCACAGTGTAAAG
Seq A exon
TGGTCATCTGTGACAACCCACAAGTAGAAAACGGAAGAAAGGCATCTGGGTTTGCATCTCAGTATATCTATGGGAGCTCAGTTAGGTTTGAATGTGATCCAGACTATGTCTTGCTTGGGATGGATGTAATTAGTTGTACTGAAAATGGCACCTGGTATCCATCATTACCAACTTGTAAAAGAA
Seq C2 exon
TTAGTGAAGATGCATGTGGTGCCCCAAAGATCTCCCATGGAGAAGTCGTTCCACAGAAATCTGTGTACTTAAGAGGAGAGTCTGTTCAGATAAGGTGCAGTCCTCGCTGTGCTTTTCCTGATGGTGGTACAGAGGTCACAGTAATGTGCCAAGGACGAAATACATGGAGTTCTGAACCAAATTGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'13-15,'13-14,14-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.9)
A:
PF0008415=Sushi=WD(100=90.3)
C2:
PF0008415=Sushi=WD(100=89.1),PF0008415=Sushi=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACCTCCAAGTATAGCCA
R:
TGGAACGACTTCTCCATGGGA
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]