MmuEX6030234 @ mm10
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:195158578-195160352:-
Coord C1 exon
chr1:195160270-195160352
Coord A exon
chr1:195159416-195159823
Coord C2 exon
chr1:195158578-195158754
Length
408 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTACCATCTCTAGAAA
3' ss Score
8.02
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTACCAATTACAAGGACAACCCTCTAGTCAGTGTGTAATTGTTGAACAGAAAGCCATCTGGACTAAGAAGCCAGTATGTAAAG
Seq A exon
AAATTCTCTGCCCACCACCTCCACCTGTTCGTAATGGAAGTCATACAGGCAGCTTTTCAGAAAATGTACCATATGGAAGCACAGTTACCTACACCTGTGACCCAAGCCCAGAGAAAGGCGTGAGCTTCACTCTTATTGGAGAGAAGACTATCAATTGTACTACTGGTAGTCAGAAGACTGGGATCTGGAGTGGCCCTGCTCCATATTGTGTACTTTCAACTTCTGCAGTTCTGTGTTTACAACCGAAGATCAAAAGAGGGCAAATATTATCTATTTTGAAAGATAGTTATTCATATAATGACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAACAGGAGCATTCGATGCAATGCTCATGGCACATGGGAGCCACCGGTACCAGTGTGTGAAAAAG
Seq C2 exon
GATGTCAGGCTCCTCCTAAAATTATCAATGGGCAAAAAGAAGATAGTTACTTGCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGACCCTGGCTATTTACTGGTGGGAGAGGACACTATACATTGCACCCCTGAGGGGAAGTGGACACCCATTACTCCCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-'16-21,'16-19,17-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.6=89.7)
A:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
C2:
PF0008415=Sushi=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACCCTCTAGTCAGTGT
R:
CTGTGCACTGGGGAGTAATGG
Band lengths:
248-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types