MmuEX6030234 @ mm9
Exon Skipping
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196984772-196986546:-
Coord C1 exon
chr1:196986464-196986546
Coord A exon
chr1:196985610-196986017
Coord C2 exon
chr1:196984772-196984948
Length
408 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTACCATCTCTAGAAA
3' ss Score
8.02
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTACCAATTACAAGGACAACCCTCTAGTCAGTGTGTAATTGTTGAACAGAAAGCCATCTGGACTAAGAAGCCAGTATGTAAAG
Seq A exon
AAATTCTCTGCCCACCACCTCCACCTGTTCGTAATGGAAGTCATACAGGCAGCTTTTCAGAAAATGTACCATATGGAAGCACAGTTACCTACACCTGTGACCCAAGCCCAGAGAAAGGCGTGAGCTTCACTCTTATTGGAGAGAAGACTATCAATTGTACTACTGGTAGTCAGAAGACTGGGATCTGGAGTGGCCCTGCTCCATATTGTGTACTTTCAACTTCTGCAGTTCTGTGTTTACAACCGAAGATCAAAAGAGGGCAAATATTATCTATTTTGAAAGATAGTTATTCATATAATGACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAACAGGAGCATTCGATGCAATGCTCATGGCACATGGGAGCCACCGGTACCAGTGTGTGAAAAAG
Seq C2 exon
GATGTCAGGCTCCTCCTAAAATTATCAATGGGCAAAAAGAAGATAGTTACTTGCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGACCCTGGCTATTTACTGGTGGGAGAGGACACTATACATTGCACCCCTGAGGGGAAGTGGACACCCATTACTCCCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-'11-12,'11-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.052 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.6=89.7)
A:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
C2:
PF0008415=Sushi=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACAACCCTCTAGTCAGTGT
R:
CTGTGCACTGGGGAGTAATGG
Band lengths:
248-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: