RnoEX0024359 @ rn6
Exon Skipping
Gene
ENSRNOG00000034164 | Cr2
Description
complement C3d receptor 2 [Source:RGD Symbol;Acc:1310065]
Coordinates
chr13:113909429-113912846:-
Coord C1 exon
chr13:113912764-113912846
Coord A exon
chr13:113911784-113912191
Coord C2 exon
chr13:113909429-113909605
Length
408 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTATCATCTCTAGAAA
3' ss Score
9.29
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
GTACGAGTTACAAGGACAACCATCTAGTAAGTGTGTAATTGTTGAACAGAAAGCCGTCTGGACCAAAAAGCCAGTATGTAAAG
Seq A exon
AAATTCTCTGCCCACCACCTCCACCTGTTCTTAATGGAAGACATTCAGGCAGATTTTCAGGAAATGTACCATATGGAAACAACGTTACCTACATGTGTGACCCAAGCCCAGAGAAAGGAGTGAACTTCACTCTTATCGGAGAGAAGACTATCTATTGTACCAACAGTAGTGAGAAGACTGGGATCTGGAGTGGCCCTGCTCCGTACTGTAAACTTTCAATTTCTGAAGCTCAGTGTCTACGACCCCAGATTAATAGGGGGCAAATATTATCTATTTTGAAGGAGAGTTATTCATATAATGACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAGCGGGAGAATTCGATGCAGTGCCCAGGGCACATGGAAGCCACCAGTACCAGTGTGTGAAAAGG
Seq C2 exon
GATGTCAGGCTCCTCCTAAAATCATCAATGGGCAAAAAGAAGATCGATACTTCCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGACCCTGGCTATTTCCTGGTGGGAGAGGACACGATACATTGTACCTCTGAGGGGAAGTGGACACCCATTCCCCCCCAGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034164-'15-16,'15-15,16-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.015 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.6=89.7)
A:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
C2:
PF0008415=Sushi=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGTTACAAGGACAACCATCT
R:
GGTGTCCACTTCCCCTCAGAG
Band lengths:
238-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]