BtaEX6067641 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5277580-5280378:+
Coord C1 exon
chr16:5277580-5277662
Coord A exon
chr16:5278358-5278765
Coord C2 exon
chr16:5280202-5280378
Length
408 bp
Sequences
Splice sites
3' ss Seq
CTATCTCTCTAATTTTCTAGAAA
3' ss Score
9.07
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GTATCGGTTACAAGGACCACTTTCTAGTCAGTGTGTAATTTTTGGACAGCGTACTTTTTGGACCAGGATGCCAGCATGTGAAG
Seq A exon
AAATTCTTTGCCCATCACCTCCTCCTATACTCAATGGAAGACATACAGGCACCTCTTCAGTGATCTTTCGATATGGAAGCACAGTCAGTTACACTTGTGACCCAGGCCCAGAGAAAGGAGTGAACTTCATCCTCGTTGGGGAGAGAACTATCCGTTGTACCACCGATAGTCAGAAGACTGGGACCTGGAGCGGACCTGCCCCACGCTGTGAACTTTCTGTTTCTGAGCTTTTGTGTCCACCTCCTCAGATCCCAAGAGGCCAAATATCATCTGGGCAGAGAGATCAATATTCCTATAATGACACTGTGGTATTTGCTTGCATGTTTGGCTTTACCATGAAGGGTAGCAGGGCAGTCCGATGTAATGCCCAAGGCACATGGGAACCGTCAGTACCAGTCTGTGAAAAGG
Seq C2 exon
ATTGTCAAGCCCCTCCTAAAATCCTCAATGGGCAGAAGGAAGACAGACACAGGGTTCGCTTTGACCCTGGGACATCCATAAAATACAGCTGTGACCTTGGCTATGAGCTGGTGGGAGAAGAATCCATACATTGTACCCCTGATGGAGTGTGGATGCCCACTGCTCCCACATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.100
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(45.6=89.7)
A:
PF0008415=Sushi=WD(100=48.9),PF0008415=Sushi=WD(100=40.9)
C2:
PF0008415=Sushi=WD(100=95.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGTTACAAGGACCACTTTCT
R:
CTTTGCATGTGGGAGCAGTGG
Band lengths:
257-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]