BtaEX0000198 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77484306-77491642:-
Coord C1 exon
chr16:77491582-77491642
Coord A exon
chr16:77490974-77491017
Coord C2 exon
chr16:77484306-77485524
Length
44 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTCTTAATTTACTAGGTT
3' ss Score
8.9
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
TTATTGGCGTTGGATTATTGCTCTGCCTGTACTGCTGTTTTTGCAGACAGAGGAAGAAAGG
Seq A exon
GTTGAAGTAAAACTGATGGGGTTAAACTAAAAGTTGCTGAGAGG
Seq C2 exon
GAAAGCAGAATGTAGCGCTACGTACACCACTTATCAGGATAAAGCAACCACTGCAACAGAACAGATGAACTGAACCGTTTCCAGGAACGCATGTACCATTCAGCCATGAAAATGAAGGAAACCTTGCCATTTGCCACAATACAGACAGACCTGAGGGGACTTTGCTGGGTAATAAGTCATGTAAAGAAAGACGTGTACTGTCTGATCTCACTTACACATGGAATCGAAAAAAACAAGCTTTCACAGAAGAAAAATGAGATTTGTCGATGTCAGCGGTGGGGGACTGGTGGGGGTGGGTTTGAGTAAAGGTGGTCAGAAAATACAAACCTTCAGTTATAGGGTGAGAAAGTACTGGGGTATAATTACAGCACAGTGGCTACCATGAGTTACTCATACTGTATTTATGTTGGCAAGTTGCTAAGAGAGTGGATCTTAAAAAGTTCTAATCACATGGAAGAAAAAAGCTTTTTGTAGTATTGACATTATCAAATCATGCTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397_MULTIEX1-12/13=11-C2
Average complexity
C1
Mappability confidence:
85%=85=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0248011=Herpes_gE=FE(24.7=100),PF041569=IncA=FE(33.3=100)
A:
NO
C2:
PF0248011=Herpes_gE=PD(24.7=80.0),PF041569=IncA=PD(36.7=88.0)
Main Inclusion Isoform:
ENSBTAT00000007108fB41
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTGCCTGTACTGCTGTTT
R:
TACATGCGTTCCTGGAAACGG
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development