BtaEX0000200 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr16:77507101-77518628:-
Coord C1 exon
chr16:77518526-77518628
Coord A exon
chr16:77508190-77508275
Coord C2 exon
chr16:77507101-77507298
Length
86 bp
Sequences
Splice sites
3' ss Seq
ACCTTTCCTTTCTCATTTAGTTA
3' ss Score
9.78
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAAGACGGTGTCCTACCCTAGCTGATCCCACAAATGGCCAAGTTATCCTTGTAAATGGAAGTACTGCGTTTGGCTCAGAGGTTCACTATGTTTGTAATAATGG
Seq A exon
TTATTACTTACTGGGGACAAATATTTCTTATTGTGAAGTTTCTGGAACTGGTGTGAACTGGAGTGATAATCCTCCAACATGTGAAA
Seq C2 exon
AGATTTTGTGTCAACCGCCTCCAGAAATTCAAAATGGAAAATACACCAATAGCCACAAGGATGTATTTGAATACAATGAAGTAGTAACTTATAGTTGTGATCCTTCAAATGGGCCAGATGAATATTCCCTTGTTGGAGAGAGCAAGCTTACTTGTATTGGAAATGGTGAATGGAGTAGTCAACCCCCTCAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005397_MULTIEX1-2/13=1-3
Average complexity
S
Mappability confidence:
77%=100=77%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(52.5=88.6)
A:
PF0008415=Sushi=PD(45.8=90.0)
C2:
PF0008415=Sushi=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTACTGCGTTTGGCTCA
R:
TCATCTGGCCCATTTGAAGGA
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development