RnoEX6046011 @ rn6
Exon Skipping
Gene
ENSRNOG00000007917 | Cd46
Description
CD46 molecule [Source:RGD Symbol;Acc:3061]
Coordinates
chr13:113810417-113813319:-
Coord C1 exon
chr13:113813217-113813319
Coord A exon
chr13:113811496-113811584
Coord C2 exon
chr13:113810417-113810614
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTTGTTCATCTAGTTA
3' ss Score
8.08
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGTTCAATGTACTATGTTACAGGACCCTTCGTTTGGCAAAGTACACTACATAGATGGTAGATTTTCATGGGGTGCTCGAGTTAAATATACTTGTATGAATGG
Seq A exon
TTATTACATGGTTGGTATGTCAGTTCTACAGTGTGAGCTTAATGGCAACGGTGATGCATTCTGGAATGGCCATCCCCCAAGTTGTAAAA
Seq C2 exon
AAGTCTATTGTTTACCACCTCCAAAAATAAAAAATGGAACACACACCTTTACTGATATAAAAGTATTCAAATACCATGAAGCAGTAATTTACAGTTGTGATCCTAACCCAGGGCCAGATAAGTTTTCCCTTGTTGGACCGAGCATGCTATTCTGTGCTGGCCATAACACCTGGAGTAGCGACCCTCCGGAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007917-'8-7,'8-5,9-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.7=88.6)
A:
PF0008415=Sushi=PD(46.7=90.3)
C2:
PF0008415=Sushi=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGGGTGCTCGAGTTAAA
R:
GCTCGGTCCAACAAGGGAAAA
Band lengths:
181-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]