GgaEX1012099 @ galGal4
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
complement component 4 binding protein, alpha chain precursor [Source:RefSeq peptide;Acc:NP_989995]
Coordinates
chr26:2630227-2631575:+
Coord C1 exon
chr26:2630227-2630323
Coord A exon
chr26:2630929-2631014
Coord C2 exon
chr26:2631369-2631575
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAATAATTTCATCTGTCTAGGTA
3' ss Score
6.79
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CAAGAAGCTGTACTCATCCGGGAGAACTACAAAATGGCGTTGTTCATGTGACAGATCTTACATTTGGTTCGGCAGTTACTTTTTCTTGTGAAAAAGG
Seq A exon
GTACAGGTTACATGGAAATCGTCAGATTTCCTGTGTAATTCAAGGTAAAGTTGTTGACTGGAATGGACCTCTTCCTTTATGTGATA
Seq C2 exon
GAGTTCCTTGTAAGCCACCTCCAAGTATAGCCAATGGGCGCTACACTGAAGCAGACAACTATGTTTATCAAACAACAGTAACCTATAGTTGTGACAATGTGCGCGCAGGAGAAAATCCCTTCTCGCTGGTTGGTTCACCTTCTATTTTCTGCACAGTTGATGAAAACTCAAATGGTGTTTGGAGTGGACCGCCTCCACAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'10-11,'10-9,12-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(50.9=87.9)
A:
PF0008415=Sushi=PD(47.4=90.0)
C2:
PF0008415=Sushi=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTTGTTCATGTGACAGA
R:
ATTTTCTCCTGCGCGCACATT
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]