GgaEX1012099 @ galGal3
Exon Skipping
Gene
ENSGALG00000001175 | C4BPA
Description
NA
Coordinates
chr26:2499978-2501326:+
Coord C1 exon
chr26:2499978-2500074
Coord A exon
chr26:2500680-2500765
Coord C2 exon
chr26:2501120-2501326
Length
86 bp
Sequences
Splice sites
3' ss Seq
GAATAATTTCATCTGTCTAGGTA
3' ss Score
6.79
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
CAAGAAGCTGTACTCATCCGGGAGAACTACAAAATGGCGTTGTTCATGTGACAGATCTTACATTTGGTTCGGCAGTTACTTTTTCTTGTGAAAAAGG
Seq A exon
GTACAGGTTACATGGAAATCGTCAGATTTCCTGTGTAATTCAAGGTAAAGTTGTTGACTGGAATGGACCTCTTCCTTTATGTGATA
Seq C2 exon
GAGTTCCTTGTAAGCCACCTCCAAGTATAGCCAATGGGCGCTACACTGAAGCAGACAACTATGTTTATCAAACAACAGTAACCTATAGTTGTGACAATGTGCGCGCAGGAGAAAATCCCTTCTCGCTGGTTGGTTCACCTTCTATTTTCTGCACAGTTGATGAAAACTCAAATGGTGTTTGGAGTGGACCGCCTCCACAGTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001175-'4-4,'4-2,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(50.9=87.9)
A:
PF0008415=Sushi=PD(47.4=90.0)
C2:
PF0008415=Sushi=WD(100=92.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTTGTTCATGTGACAGA
R:
ATTTTCTCCTGCGCGCACATT
Band lengths:
179-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]