BtaEX0000372 @ bosTau6
Exon Skipping
Description
Bos taurus major histocompatibility class I related protein (MIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001127317]
Coordinates
chr23:27725595-27727008:-
Coord C1 exon
chr23:27726748-27727008
Coord A exon
chr23:27726236-27726499
Coord C2 exon
chr23:27725595-27725654
Length
264 bp
Sequences
Splice sites
3' ss Seq
GGGGGGTGGGGATGGGGCAGGCT
3' ss Score
-4.54
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GATCCCACAGTCTTTTATACAACATGACTGTGCTTTCCCGGGATGGCTTTGTGCAGTCCAGGTTTTTTGCTGAAGGATACTTGGATCGTCAGGCCTTCCTGCACTATGATCACAAAAAAGGCAGGGCAGAGCCCTGGGGACGGTGGCCTGAAAAACTGGCAGCAGAGACGTGGGAGACAGAGACCATGGACTTGAATGAGAGCTGGAAGGAGCTCAGAAAACTTCTAGCAGAAATCCTGTCCCTGCAGGAGGAGAAAGGAG
Seq A exon
GCTTACATTCCCTCCAGGAGACCGTGGGCTGTGATATCAATGAAGACAGCCACCCCCAGGGCTTCCGGCTTCTCTACTTCAATGGGGAGCTCCTCCTCTCCTGCTACCCGGAGCCCCACGGATGTACCCTGCCCCAGTCCTCGGCTCGGACCTTGGCCATGGAAATGGAGTTAAGCAAGCATTACCAGGCCCACGTGCAGGGAGAACTTTGTAGGAGACTGCGGAGCTACCTAGAATCCTGGCCGGGCTTCACGGAGAGGACAG
Seq C2 exon
AGCCCCCAGCCGTGAATGTGACCTGCAGCCAGGACTCAGAGGGCATGGTCCACCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010166-'2-4,'2-1,3-4
Average complexity
S
Mappability confidence:
100%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.286
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(51.8=98.9)
A:
PF0012913=MHC_I=PD(47.6=89.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATGACTGTGCTTTCCCGG
R:
TGGACCATGCCCTCTGAGTC
Band lengths:
293-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development