HsaEX0039181 @ hg38
Exon Skipping
Gene
ENSG00000204520 | MICA
Description
MHC class I polypeptide-related sequence A [Source:HGNC Symbol;Acc:HGNC:7090]
Coordinates
chr6:31410543-31412225:+
Coord C1 exon
chr6:31410543-31410797
Coord A exon
chr6:31411072-31411359
Coord C2 exon
chr6:31411947-31412225
Length
288 bp
Sequences
Splice sites
3' ss Seq
TCACTGCTGGGTGGGGGCAGGCT
3' ss Score
2.79
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGCCCCACAGTCTTCGTTATAACCTCACGGTGCTGTCCTGGGATGGATCTGTGCAGTCAGGGTTTCTTGCTGAGGTACATCTGGATGGTCAGCCCTTCCTGCGCTATGACAGGCAGAAATGCAGGGCAAAGCCCCAGGGACAGTGGGCAGAAGATGTCCTGGGAAATAAGACATGGGACAGAGAGACCAGGGACTTGACAGGGAACGGAAAGGACCTCAGGATGACCCTGGCTCATATCAAGGACCAGAAAGAAG
Seq A exon
GCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAACAGCACCAGGAGCTCCCAGCATTTCTACTACGATGGGGAGCTCTTCCTCTCCCAAAACCTGGAGACTGAGGAATGGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTGGCCATGAACGTCAGGAATTTCTTGAAGGAAGATGCCATGAAGACCAAGACACACTATCACGCTATGCATGCAGACTGCCTGCAGGAACTACGGCGATATCTAGAATCCGGCGTAGTCCTGAGGAGAACAG
Seq C2 exon
TGCCCCCCATGGTGAATGTCACCCGCAGCGAGGCCTCAGAGGGCAACATCACCGTGACATGCAGGGCTTCCAGCTTCTATCCCCGGAATATCATACTGACCTGGCGTCAGGATGGGGTATCTTTGAGCCACGACACCCAGCAGTGGGGGGATGTCCTGCCTGATGGGAATGGAACCTACCAGACCTGGGTGGCCACCAGGATTTGCCGAGGAGAGGAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCACAGCACTCACCCTGTGCCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204520-'6-15,'6-6,7-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=0.044 C2=0.064
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PU(50.3=98.8)
A:
PF0012913=MHC_I=PD(51.4=93.8)
C2:
PF0012913=MHC_I=PD(49.1=88.3),PF0765410=C1-set=WD(100=89.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGTCAGGGTTTCTTGCT
R:
TCCGGGGATAGAAGCTGGAAG
Band lengths:
292-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development