BtaEX0000388 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99470410-99473307:+
Coord C1 exon
chr11:99470410-99470483
Coord A exon
chr11:99471577-99471631
Coord C2 exon
chr11:99473223-99473307
Length
55 bp
Sequences
Splice sites
3' ss Seq
TTATTGTTTCCATTTTACAGATG
3' ss Score
10.59
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
Exon sequences
Seq C1 exon
AATCAGATTGAGGCAGAGCTGAATAAACATTGGCAGCGGCTGTTAGAAGGACTTTCTTACTATAAACCTCCCAG
Seq A exon
ATGGGGCAACTGAGACACAAAGAGGTTAAGTAACTTGCCCAAGGTCACACAGCTA
Seq C2 exon
TCCAAGTTCAGCTGAAAAAGTGAAAGCTAGTAAAGATGTAGCTTCACCACTGAAGGAACTGGGTTTAAGAATCAGCAAGTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.138
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(13.6=100),PF104874=Nup188=FE(13.9=100)
A:
PF104874=Nup188=PD(3.4=20.0)
C2:
PF118943=DUF3414=FE(15.8=100),PF104874=Nup188=FE(16.2=100)
Main Inclusion Isoform:
ENSBTAT00000014030fB78
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATTGAGGCAGAGCTGAA
R:
ACCCAGTTCCTTCAGTGGTGA
Band lengths:
136-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development