BtaEX0000389 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99470410-99473955:+
Coord C1 exon
chr11:99470410-99470483
Coord A exon
chr11:99473223-99473307
Coord C2 exon
chr11:99473875-99473955
Length
85 bp
Sequences
Splice sites
3' ss Seq
ATTCACTGTTCTTTTCATAGTCC
3' ss Score
7.9
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AATCAGATTGAGGCAGAGCTGAATAAACATTGGCAGCGGCTGTTAGAAGGACTTTCTTACTATAAACCTCCCAG
Seq A exon
TCCAAGTTCAGCTGAAAAAGTGAAAGCTAGTAAAGATGTAGCTTCACCACTGAAGGAACTGGGTTTAAGAATCAGCAAGTTTTTG
Seq C2 exon
GGTCTTGATGAAGAACAGAGTGTGCAGTTACTCCAGTGTTACCTTCAAGAGGATTACAGAGGTACTCGGGACTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.000
Domain overlap (PFAM):
C1:
PF118943=DUF3414=FE(13.6=100),PF104874=Nup188=FE(13.9=100)
A:
PF118943=DUF3414=FE(15.8=100),PF104874=Nup188=FE(16.2=100)
C2:
PF118943=DUF3414=FE(14.7=100),PF104874=Nup188=FE(15.0=100)
Main Skipping Isoform:
ENSBTAT00000014030fB78
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGATTGAGGCAGAGCTGA
R:
AGTGAGTCCCGAGTACCTCTG
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development