GgaEX6015149 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5406838-5408289:+
Coord C1 exon
chr17:5406838-5406911
Coord A exon
chr17:5407508-5407592
Coord C2 exon
chr17:5408209-5408289
Length
85 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTTTTTTCTTTTAGTAC
3' ss Score
9.72
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCACAGATTGCATCAGAACTGAACAAGCACTGGCAGAGATTGTTAGAAGGGCTTTCATACTACAAACCTCCAAG
Seq A exon
TACAACTTCAGCAGAGAAGATAAAAGCTGACAAAGATGTAGCTGCTCCACTAAAAGAGTTGGGTCTGAGGGTCAGCAAGTTTTTG
Seq C2 exon
GGTCTGGATGAAGAGCAGAGCGTGCAGTTGTTACAGTGTTATCTTCAGGAAGATTACAGAGGAACAAGGGACTCTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548-'11-4,'11-3,12-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(2.6=100)
A:
PF104874=Nup188=FE(3.1=100)
C2:
PF104874=Nup188=FE(2.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGATTGCATCAGAACTGAACA
R:
TCAGAGAGTCCCTTGTTCCTCTG
Band lengths:
152-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]