MmuEX7033487 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30298416-30301089:+
Coord C1 exon
chr2:30298416-30298489
Coord A exon
chr2:30300800-30300884
Coord C2 exon
chr2:30301009-30301089
Length
85 bp
Sequences
Splice sites
3' ss Seq
ACTGAGTGTTTTTCTCATAGTCC
3' ss Score
5.98
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
AATCAGATTGAGGCGGAACTGAATAAATATTGGCAGCGGTTGTTAGAAGGGCTTTCTTACTACAAACCTCCCAG
Seq A exon
TCCAAGTTCAGCTGAAAGAGTGAAAGCTAATAAAGACGTAGCGTCACCTCTGAAGGAGCTGGGCCTAAGAGTCAGCAAGTTCTTG
Seq C2 exon
GGTCTTGATGAAGAGCAGAGTGTGCAGTTACTGCAGTGTTACCTTCAGGAGGATTACAGGGGTACTCGGGACTCACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'2-9,'2-6,4-9=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.218 C2=0.031
Domain overlap (PFAM):
C1:
PF104874=Nup188=FE(23.5=100)
A:
PF104874=Nup188=FE(27.5=100)
C2:
PF104874=Nup188=FE(25.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGATTGAGGCGGAACTGA
R:
TAGTGAGTCCCGAGTACCCCT
Band lengths:
151-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types