BtaEX0000616 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 419 (ZNF419), mRNA. [Source:RefSeq mRNA;Acc:NM_001101932]
Coordinates
chr18:64870965-64874863:+
Coord C1 exon
chr18:64870965-64871247
Coord A exon
chr18:64872945-64872983
Coord C2 exon
chr18:64874737-64874863
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATGGCCTGGCTTTTCCATAGGTT
3' ss Score
8.66
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
AGTCGGGGCGGTCGTTTTCGGGGGTCTCTTGGGTCTGTGTGCTGGATGAGAGGCTCCGGGAAGCTGGTGTTGGACTGGGGTGACGGGAGCGGGAAGGCGCGGAGGAGGCTAACGTTCTCTTCTCAGCACTAATGCGGGTCTGACGTTCAGCAGCGGCGCCCGGGAATCACCTGATTCCGATTCCGGGACAGGGATGCGTGGGGCCCGACCTGGTCCACAGCTCCTGGCCCTGCTCCGCCCACAGAGTCCGATGGCAGCGGCCGCTCTGAAAGTCCCGCCTGAG
Seq A exon
GTTGCTGTGGCTGCGGAGTGGCTTCCAGACCATGAAGAG
Seq C2 exon
GGCCAAGTGACCTTTGAGGACGTGGCTGTCTACTTCTCCTGGGAGGAGTGGGGGCTCCTTGATGAGGCCCAGAGGCTCCTGTACTGTGGGGTGATGCTGGAGACCTTCTCACTGATGGCGTCTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017613-'0-1,'0-0,2-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGTCCACAGCTCCT
R:
CCCAGGAGAAGTAGACAGCCA
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development