HsaEX0073624 @ hg19
Exon Skipping
Gene
ENSG00000105136 | ZNF419
Description
zinc finger protein 419 [Source:HGNC Symbol;Acc:20648]
Coordinates
chr19:57999079-58002965:+
Coord C1 exon
chr19:57999079-57999351
Coord A exon
chr19:58001515-58001553
Coord C2 exon
chr19:58002836-58002965
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATAGTCTTGATTTTCCATAGGTT
3' ss Score
8.87
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTGCGACACGCAATGGGCGGGACTTCCGGCGTCTCGTTTGGTATTCACTTTCGCGACTCAGGTGAACTAACCTGCGAGAAGCTGGTTGTGCGCTGAGGCGACCAGCGCCGGAAGGCACGGTGGCGACTCACGCTGTTCTCGCCGCTCAGAGGCGGGTCTGAGGCTCGGTGGCGGCGCCCAGGGTGGCCCGGGCCCTTTCCTCGGTCATTGTCTCCCCTCCAGCTCTACTCACAGGCTCCGATGGCGGCGGCCGCCCTGAGGGACCCCGCTCAG
Seq A exon
GTTCCTGTGGCTGCAGACTTGCTTACAGACCATGAGGAG
Seq C2 exon
CAGGGCTATGTGACCTTTGAGGATGTGGCTGTCTACTTCTCCCAGGAGGAATGGAGATTGCTTGATGACGCTCAGAGGCTCCTCTACCGCAATGTGATGCTGGAGAACTTTACACTTCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105136-'0-2,'0-1,1-2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=93.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGTCTCCCCTCCAGCTC
R:
CCTGGGAGAAGTAGACAGCCA
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)