BtaEX0000900 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B813]
Coordinates
chr5:102960646-102962243:+
Coord C1 exon
chr5:102960646-102960960
Coord A exon
chr5:102961622-102961741
Coord C2 exon
chr5:102962148-102962243
Length
120 bp
Sequences
Splice sites
3' ss Seq
TATGGTCCACTTTGACTCAGCTC
3' ss Score
4.22
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ACAGAGAGAAGCTCCGGCTCAGGGGAGGAGACAGCGAGTGCTCAGGGCGGGTGGAGGTCTGGCACAGCGGCTCCTGGGGCACCGTGTGTGATGACTCCTGGAGCCTGGCAGAGGCTGAGGTGGTGTGTCAGCAGCTGGGCTGTGGCCCGGCCCTGGAAGCTGTGCCAGCTGCGACATTTGGCCCTGGAAACGGGAGCATCTGGCTGGATGAGGTGCGGTGCGGAGGTCGGGAGTCCTCCCTGTGGGACTGTGCTGCTGAGCCCTGGGGGCAGAGCGACTGCAAGCACGAGGAGGATGCTGGTGTGAGGTGCTCTG
Seq A exon
CTCCAGACCCTGGCATCCTCTCCCTTCCCATGATCATCTGCATCATCCTCGGAGCCCTTCTCTTCATGGTCCTCATCATCCTGGGGATTCAGCTACACAGATGGAGAGCAGAGCACCAAG
Seq C2 exon
AGTTATCTGATTTTGAAGCTGCTGTTGATGAAGCTGTGTACCAGGAGATTGATGACATCATAAAACCAGGGAAGAAGGACCTGTTGGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024318_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.000 C2=0.152
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCTGAGGTGGTGTGTC
R:
ACAGCTTCATCAACAGCAGCT
Band lengths:
243-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development