BtaINT0005273 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B813]
Coordinates
chr5:102960646-102961741:+
Coord C1 exon
chr5:102960646-102960960
Coord A exon
chr5:102960961-102961621
Coord C2 exon
chr5:102961622-102961741
Length
661 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TATGGTCCACTTTGACTCAGCTC
3' ss Score
4.22
Exon sequences
Seq C1 exon
ACAGAGAGAAGCTCCGGCTCAGGGGAGGAGACAGCGAGTGCTCAGGGCGGGTGGAGGTCTGGCACAGCGGCTCCTGGGGCACCGTGTGTGATGACTCCTGGAGCCTGGCAGAGGCTGAGGTGGTGTGTCAGCAGCTGGGCTGTGGCCCGGCCCTGGAAGCTGTGCCAGCTGCGACATTTGGCCCTGGAAACGGGAGCATCTGGCTGGATGAGGTGCGGTGCGGAGGTCGGGAGTCCTCCCTGTGGGACTGTGCTGCTGAGCCCTGGGGGCAGAGCGACTGCAAGCACGAGGAGGATGCTGGTGTGAGGTGCTCTG
Seq A exon
GTGAGTGAGGGGCTCGGTGTTCATCATAGTGAGTGGAGGACAAGTGTGAGTTTGTATCCAGAGCACTTCCTGGGATAACCTGCTGCTTTGTGCTCTGGCTCGAGAAAAAGCTATTATCTGATTTCCTGGGATCTGGGAGAGAATGATATGCCCATAATGATAGATGTAACCTGGTGGCTTTTTCCAATTAACTCAGTACAGTAATCCATTCTTTTTTTCCTTCTCTCACTGTGAGAGAACAGCAGTTCCCTCCAGCCATGGAAGTAAGTGGTTCTGCTGCTCTGAGCAGTGTGATTGTGGAGATCCCCATATTTTCAGGCACCTGCACTATATATCTTTATATTTCAACAAAACTACCCATATCAGTACAGAAAACCTTAATGATCTCATGTTTACAATCCTGTTAAGCAGTGGCAACTGATGTCCTCCAGAGCTTTACCAACTTTCATCCTGTAAAAATCCTCTAGAACCAAAATGAGAAGACACTTGACATAGCTCAGGGAAAGACCTCTGTCAATCACATCTTGGGATTCAGGCAAACCCATTGTGTCTTACTGGTGACTTCATGGTCTTGAAGACTCAGAAGAAGACCAGTATAAGGACAGAAGGGTTTCTCTGGACTTATGACCCTCCTAAAACCCTATGGTCCACTTTGACTCAG
Seq C2 exon
CTCCAGACCCTGGCATCCTCTCCCTTCCCATGATCATCTGCATCATCCTCGGAGCCCTTCTCTTCATGGTCCTCATCATCCTGGGGATTCAGCTACACAGATGGAGAGCAGAGCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024318:ENSBTAT00000051899:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGATGACTCCTGGAGC
R:
TGCTCTGCTCTCCATCTGTGT
Band lengths:
347-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]