GgaINT1031000 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr1:77260920-77261477:-
Coord C1 exon
chr1:77261150-77261477
Coord A exon
chr1:77260956-77261149
Coord C2 exon
chr1:77260920-77260955
Length
194 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GACTCACGTTCATTTTGTAGGTG
3' ss Score
8.92
Exon sequences
Seq C1 exon
TATTATTCTGCAGACAGGGAGAAGTTACGTGTTGTAGGAGGAGAGGATGCGTGCTCAGGAAGAGTGGAGATTTGGAATCAGGGTTCCTGGGGAACAATCTGTGATGATTCCTGGGATCTGGCAGATGCTAATGTTGTATGCAGGCAACTGGGCTGTGGTTCTGCTGTGTCTGCTCTGAGTGAAGCTGCCTTTGGGGAAGGGACAGGTCCCATCTGGTTGGAGAAGGTCCACTGTAAAGGAACAGAACTGTCACTTTGGGACTGTCCTTCCAAGCCCTTGTTTGGTAAAAACTGTAATCACAAGGAGGATGCTGCCGTGGATTGCTCAG
Seq A exon
GTTAGTAAAATGGTCCTTTGGTTCATCACACAAACTGGGGAGGAAGGTGGATAGAGGAATATTATGCCATCTGTCCATCCCAGTGATTAGCCTTTTCATAATTCGGACTGAAGGAACCTCACAAATGATATGAATATATTCTTACTACTTTTCAGTTACCTCTTCCTTAATCTGGACTCACGTTCATTTTGTAG
Seq C2 exon
GTGTGACAGAAACAACAACATCTTCCACCAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014720:ENSGALT00000023738:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGATCTGGCAGATGCTA
R:
TGCTCTGGTGGAAGATGTTGT
Band lengths:
254-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]