RnoINT0031931 @ rn6
Intron Retention
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156778461-156779370:+
Coord C1 exon
chr4:156778461-156778772
Coord A exon
chr4:156778773-156779340
Coord C2 exon
chr4:156779341-156779370
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTCCCTCTTTTCTCCTGCAGGAA
3' ss Score
14
Exon sequences
Seq C1 exon
ACAAAATAAGACTACAGGAAGGGCATACAGACTGTTCTGGACGTGTGGAGATCTGGCATAGAGGTTCCTGGGGAACAGTGTGTGATGACTCCTGGGATCTTAATGATGCTGAGGTTGCATGTAAGCAGCTGGGCTGTGGTCAAGCTGTGGAGGCACTAAAAGAAGCAGCATTTGGTCCAGGAACTGGGCCCATATGGCTGAATGAAATGAAGTGTAGAGGGAATGAGTCTTCCCTGTGGGATTGTCCTGCCAGACCATGGAGTCACAGCGACTGCGGGCACAAAGAAGATGCTTCTGTGAAGTGCCTCCCAA
Seq A exon
GTGAGTGTCACCAACATGGATTGAGCTGGACTCTTTGGTATCAAAGATAAGCCAGGCTTTAAAGTGTGATGTGTGAAGGGTTGATCTGGCAACGAGGGGGTCTGATGGGAGAACAACTGCGATGTTTCTATCTAAAGCAGTGGTTCCTAACTTTCCTATGCTGCAACCCTTTAAATGCAGTTCTTCTTGTTGTGACGACCACCCCCACAACCATAAAAATCATTTTGTTGCTGCTTCATAACTGTAGCTTGCTACTGTTGTGTGTTATAACATAAATATCTGATATGTGGGATATCTGATATGTGACTCACACCCCCCCCCAAATTGTGAAGCACTGATCTAAAGGAATGGTGAGAAAAACATTTACTGTTACACAGTGGCTGTTACAGAAGATAGGCATATAACCTATGTATCTGTGTGCAGAAGAAATACTGGGAGCTGCAAGCTTTAGGTGGGAAGGTGAGGTTCACTTGTTTAAGCAGCAGTGGAGGCTCACACAAAGATATTGATATTTGCTTCATTCATGGCCCATAAGATTAAGGGGTTTTTTCCCTCTTTTCTCCTGCAG
Seq C2 exon
GAATGACTTTAGAATCACAGCATGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253:ENSRNOT00000068407:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATAAGACTACAGGAAGGGCA
R:
CTGTGCCATGCTGTGATTCTA
Band lengths:
342-910
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]