GgaINT1001349 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9KZK0]
Coordinates
chrLGE64:639193-640771:-
Coord C1 exon
chrLGE64:640466-640771
Coord A exon
chrLGE64:639526-640465
Coord C2 exon
chrLGE64:639193-639525
Length
940 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TCTCTCCCTTTTGCCACCAGAAG
3' ss Score
8.72
Exon sequences
Seq C1 exon
AGCTGCGCCTGGTGAATGGCTTGAACCGCTGTTCTGGGAGAGTGGAGATACTGTATGATCACCAGTGGGGGACTGTGTGTGATGACGACTGGAGCTTTACTAATGCCAAAGTGGTGTGCCGGCAGCTGGGCTGTGGGGAAGCAGTATCAGCCTATAGCTCGGCACACTTTGGCCAGGGGTCAGGTCCCATTTGGCTAGACAACGTTCAGTGCATTGGGACGGAAACTGCCCTGTCTCAATGTCAGGCCAGGCCACTGGGCTTCAGTAACTGTGACCACGGAGAAGATGCTGGAGTTGTGTGTGCAG
Seq A exon
GTAACCGCTGATAACATCATGCTGGTATACCAGGAGAAGTTCAGAGGAGAATGCATTTCTCCAGGGCTTAATACCATTTTCAAAGCTCCAACAAAGTGATGGGTGGTGGACACCTGGGTAGAAGGGTGACACTGTCCTCTCTCTTCTCTACTGCAAAGTGTTGTGACACACTTCTGAGCAGAACTCCTTGGAGTATATACAGAAAGCCTCTTCCTTTGGAGGTTGCTGGGGTCTCCAAGCCAATACAACTGGACCCATTAAAAATAGATTGCAGAAGTTTATGTGAACAGTTCAATGTTCACACATTGAATGTGGACAGGCTCTGAGGCTACACTGCTTTGTGTGCACCTACTCAACAGCTCTGAACCCTCCTGTATAATATACTGGTAGCATCATTGTAGAGATGATCAGAGGGCTGAAGCACCTCTCCTATGAAGACAAGCTGAGGGGGTTGGGCTTGGTCAGCCTGGAGAAGAGAAGGCTTTGGGGAGATCTTACTGACACCTATCAGTACTTACAGGGGGCTTAGAAGAAAGACAGAGAAAGTCTTTTTACACAGTCTACTATTCCCAGAACAGGGGGGAATTGTTTTGAAGTATAATAGGGGAGATTTAGGTTAGATGTTTGATGGAAACTCCTTACTCAGAGAGTGGTGAGACCTTGGCACAGGCTGCCCAGAAAAGCTGTGGATGCCCCATCACTGGAGCCACTCAAGGCCAGGCTGGATGGGGCCCTGGGCAAGCTGATGTACTGGGTGGCAACCAGCCTACAACAGGCATTTGGAACTGGATGATCTTTAAGGTGTCTTTCAGTCTATGCTATTCTACGGTTCTATGATCTTTAAGGTCTCTTCCAAACTAAGCCATCCCATGATTGTACAATCCTAAAGGTACCTTTTAACCTAAGGCATTCTATGTTTCTCTCTCCCTTTTGCCACCAG
Seq C2 exon
AAGGGATAATCACCGAAACACCAGCTCAGCTGCGCCTGGTGAATGGCCCCAGCCAGTGCTCAGGACGCGTGGAGGTGCTGCACGACCACCACTGGGGCACAGTGTGTGATGATGACTGGAGTCTGAGCGAGGCCATGGTGGTGTGCCGGCAACTGGGTTGCGGGGCGGCTGTCTCAGCCCCAGGCTCAGCTCACTTTGGGCAAGGCTCTGGCCATATTTGGCTGGATAATGTGAACTGCACAGGTGCAGAAACTGTGCTCTCTGAGTGCCCGAGCAGGCCATGGGGATCCAATGACTGCAGCCACAGGGAGGATGCTGGTGTGGTGTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009103:ENSGALT00000014816:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=95.1)
A:
NA
C2:
PF0053013=SRCR=WD(100=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCACGGAGAAGATGCTG
R:
CTGTGGCTGCAGTCATTGGAT
Band lengths:
343-1283
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]