MmuINT0050162 @ mm9
Intron Retention
Gene
ENSMUSG00000047517 | Dmbt1
Description
deleted in malignant brain tumors 1 [Source:MGI Symbol;Acc:MGI:106210]
Coordinates
chr7:138249667-138251425:+
Coord C1 exon
chr7:138249667-138249990
Coord A exon
chr7:138249991-138251398
Coord C2 exon
chr7:138251399-138251425
Length
1408 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
ATGGCTTCTTTTTCTTACAGTCC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GAAATGATTCTTCATTGGCGCTGAGGCTGGTAAATGGATCAAACCGGTGTGAGGGCCGAGTGGAGATCTTGTACAGAGGCTCTTGGGGCACCGTGTGTGATGACAGCTGGGGCATCAGTGACGCCAATGTGGTCTGCAGACAGCTCGGTTGTGGCTCTGCTCTGTCTGCACCAGGAAATGCTTGGTTCGGTCAGGGCTCAGGGCTCATTGTCCTGGATGATGTGTCTTGCTCGGGGTATGAGTCTCACCTGTGGAACTGTCATCATCCTGGCTGGCTTGTCCATAACTGTCGCCATTCTGAGGATGCAGGAGTCATCTGTGCAC
Seq A exon
GTGAGTTGGGTGGAACCCTCTACTGTCTTCTTCCAGTATGAACGTTCTTCTTATCCTTGGATCTCACCCCTCAGTGCATCTGTCTCTCTTATAAACTGAAACTGCCTCATTTCTTTACCAGTAGTGATTTTTCACCTCCTTCAACAAGGTTGGTTGTGGAAATTGTCACTGGAAACCCACACCTAGGCTTTGGTAGAAGAATCAAGAAGAAAATCACAGGCTTCAGTGCTTTTTCTACCATGGTTGAGTTCTATGGGAACAGGGGGAACTGTAGTTTATAGACTGGAATATACTGTATCAATGAGCATACACCACTTCAAAGTGTTTTCAGGGGAAGTGTGGTTTCCTCAGACCATAGCAGTTCCCAAGGTTTCTGAATGAGGCCTATTGGTTGGCACTGTGAATATGAGTATGTACAGAGAAATTTTTAGGATAGAGATGGGTATCTATATCCTACAAAAGAACACCTTCAATTTTTCTAACTCAAGTCTATTTGATTGGGATTAATCCAACACTGAAAACTCTACGCTAACTTTAACCCAACAGAAAATCTAACCCAAACCCTATCCTGAACACTAACCCTAACCCAAACCCTAATCCCCAAACCCTAACCCTAACTCCCTAACTCTAACCCTAATCCAATATAACCCTAACACTATTCCAATCCTAACATTAACACTAACACTAATCTAACCCTAATCCTAAACCAAATCCTAACCCCCTAAGCCTAACCCACCCCTAATCCCTAACCATAACCCTAACCCAACCCTAACACTAACCCAAACCCTAACCCCCTAACCAATCCTAAACCAAATCCTACCCCCCTAAGCCTACCCCAACCCTAATCCTAACCATAACTCTAACCCAACCCTAACACTAACCCAAACCCTAACCCAACCCTAACCCTAATTCAAACCCTAACCCCCTAACCCAAACCCTAACCCAACCCTAACCCCCTAACCCAAACTCTAATCCAACCCTACCCCCATAACCCAAACCCTAACCCAACCCTAACCCCTTAACCAAACTCTAACCCAACCCTAACCACCTAACCCAAACCTTAACCCAATCCTAACCCTAACCCAACTCTAACCCTAACCCTGAGGCCTAGATGGTTCCATGTAAAAATTTGTCCTGGACAAGGCCAATTAACATCTGAATCACTGGGCAGTTATGAAATACAAAGTTCAGTCTATTACCTTGTCCAGACACATTTGTCACCTTCTTCCAGAAGGTGGAATACTAGTTGAGCCTCACAAAAAAAAATCTTCCTATGAGTATAGATGGCTATCAATTTCTACTTGGTGGTGGGGGGTGAGCAGGGCTTAATTCAAAGTCTGCCCAGTGTCACCCGCTCAGGTTCCAGATTAGTCACCTTCTGATCTAACATGGCTTCTTTTTCTTACAG
Seq C2 exon
TCCCTGAGGTGACTTCTCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047517-Dmbt1:NM_007769:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=89.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATTCTTCATTGGCGCTGAGG
R:
ACTGGGAGAAGTCACCTCAGG
Band lengths:
343-1751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: