BtaINT0049811 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022715 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr26:42797743-42798637:+
Coord C1 exon
chr26:42797743-42798113
Coord A exon
chr26:42798114-42798610
Coord C2 exon
chr26:42798611-42798637
Length
497 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ATACTTCCTCTTTCTTGCAGATA
3' ss Score
11.43
Exon sequences
Seq C1 exon
GTATTTGCTGGGGGATGGGGTCATCACCTCTTACAGCATGTGTCTTTCAGATGTCAGCTTGAGATTGGTGAACTGGAACTCCTCCCATCCCACATGTGCTGGGCGTGTGGAAATCTACCATGGTGGCCAGTGGGGAACAGTGTGCGATGACAACTGGGACGTTCAAGATGCCCAGGTGGTGTGCAGACAGCTGGGCTGTGGATATGCAGTCTCAGCCCCAGGAAATGCCTACTTTGGCTCTGGCTCTGGTCCCATCACCTTGGATGACGTGGTGTGCTCAGGGGCGGAGTCCAATCTCTGGCAGTGCCGGAACCGAGGCTGGTTCTACCACAATTGTGGCCACCATGAAGATGCTGGAGTCATTTGCTCAG
Seq A exon
GTATTGGGTGATGTCATTTGCGGAAGGCCCCTTTCACCTCTGAGCTGCTGGAAACTGGAGCAGGGGAAACTGGAGGCCAGTGACTGATGGTGTCTGTGGCTAGTTCAGGGTGTGGGGGTGGGCAGGAGCTTGTCAGAGTACCCCTTGACTTGTGCACTCGGGAGACCTTGCAGAGGCCACTTCATCTCTGGTCTTTGTGCTGATCACTCAGCTGCTATCCAGCTTACCATTACTCTCCCATTTGCTTTATGGGCTTACCTTGTGGCTCAGAGGGTAAAGAATTCACCTAAAAGCAGAAGATGCTGGTTCGATCCCTGGTTTGGGAGGAGCCCCTGGAGAAGGAAATGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGTCAGAGGAGCCTGGCAGGGTACAGTGCTTGGAGTCCCTAAAGTGCCCGAGATGAGTTAGCAACTGAACAACAACTTGGTGTGGAGGCTGATCATACTTCCTCTTTCTTGCAG
Seq C2 exon
ATATACCGACCAACTCCTCCACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022715:ENSBTAT00000015890:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=78.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCTTGAGATTGGTGAACTGG
R:
GAGTGGAGGAGTTGGTCGGTA
Band lengths:
342-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]