HsaINT0048784 @ hg38
Intron Retention
Gene
ENSG00000187908 | DMBT1
Description
deleted in malignant brain tumors 1 [Source:HGNC Symbol;Acc:HGNC:2926]
Coordinates
chr10:122630961-122631875:+
Coord C1 exon
chr10:122630961-122631281
Coord A exon
chr10:122631282-122631854
Coord C2 exon
chr10:122631855-122631875
Length
573 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTTCTATTCCTTTTTCAGGAA
3' ss Score
12.91
Exon sequences
Seq C1 exon
ATGCCACCTTGAGGTTGGTCAATTTAAATTCATCCTATGGTCTATGTGCCGGGCGTGTAGAAATTTACCATGGTGGCACCTGGGGGACAGTTTGTGATGACTCCTGGACCATTCAGGAAGCTGAGGTGGTCTGCAGACAGCTAGGGTGTGGACGTGCAGTTTCAGCCCTTGGAAATGCATATTTTGGCTCTGGCTCTGGCCCCATCACCCTGGACGATGTAGAGTGCTCAGGGACGGAATCCACTCTCTGGCAGTGCCGGAACCGAGGCTGGTTCTCCCACAACTGTAATCATCGTGAAGATGCTGGTGTCATCTGCTCAG
Seq A exon
GTATGGCCCAATGCCATGGAAGGCCCATTTCACCTGTAACTTGCTATAAAGCAAGAGCTTAAGGCCAGTGGCTGATGGTGTCTGTGGCCCAGGCAGGAGCTGGTCATTGTGTCCTCGTGGCCTGCGCACTCCAGAAGAGCATGCAGGGGGCTGCTTTATCTTTGGCCAGTTTCTGGACCCAGGGCCATTATGCTGAACACTCATCTGACTAAAGGACCTCCAGCAATGATTTTACTTCTTTATGCTTCAGTTTCCTTGACTGTTGAGTCGGGGTGGCTATGATAGTACTTGCTACTGGTGACAATTGGGATGGTTTTAGAACAATCATGGTCAAGGAGAGAGTGATGGGTGTTATGACCTCAGCTGTAATCCTGATGACCACAAGTATGACGGGACTTAGGGAGCATCTGGGGAAGCTGGGAAGGCTTCTCAATAGCAATTGCTGGGTGGACCTGGGGACCCTCGCCGAGGGGGGTCAGGTTATGGGCCATGTAAGTGTATCTCTGTCTCATTCCGGCCCCTCCTCCAAGCCACATGTCTGTGACCTATGCTTTTTTTCTATTCCTTTTTCAG
Seq C2 exon
GAAACCATCTATCGACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187908:ENST00000338354:46
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=90.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development