GgaINT0043104 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C1A5]
Coordinates
chr6:30893330-30894919:+
Coord C1 exon
chr6:30893330-30893641
Coord A exon
chr6:30893642-30894592
Coord C2 exon
chr6:30894593-30894919
Length
951 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CATTGTGACATTTATTTCTGCTC
3' ss Score
-1.34
Exon sequences
Seq C1 exon
AGGTGTCCATGAGGCTGATAAATGGCAGAAACAGATGCGAAGGGCGGGTCGAAGTCTACTATAAGGGAAGCTGGGGGACCGTATGTGACGATTTCTGGGACATAAATGATGTGCAGGTCGTGTGCAGGCAGCTGGGATGTGGAGATGCTCTCTCTGCACTGGGAAAAGCACATTTCAATCCAGGGGCAGGGGACATTTTCCTGGATGATGTGCAGTGCCATGGAAATGAATCCTACCTGTGGGAATGCTCTCACAGAGGATGGGCCACACATAACTGCAGGCACAGAGAAGATGCCGGTGTGCGTTGCTCAG
Seq A exon
GTACAAGTGGAATGGTTCTATTTATTTAAGTAAAACTCTGCACTGCATAAATTGAGAATCTTGTCATCAGCCTGAGGCAAGGGCAATAGCAACTAAGACAATAGAGCTGTACTTAGAAGTATGGTGAGGCAGAAATCAAGAAGTCAACTGCTTCTCTTTCTGTTTTCCTCCATGTATCTTCTGGTATGGGATGCTCGGAAGATGCTCCTGGTGGTCAGTCAGTGACACTGATGTGAGTGCAGAGAGAAGGAATGTTGTGTTCTATGCAGGATACCAGAGGAGGAAATACTTGGTGGCATGGTAGATACCTCACGCTTTGGGCTTCGCAGGCATGGCACTCCCACAGGAATTTATTTTTAGAAGCCATTCCTAAAGAATCAAATCTCACTCTATCTTTTCAACACAAGCTGAATGTTTTCCTGATTAAGGTAATTAAAGGTAGTACATTAAAAGTAACTTAGTTTTAGAACAAATCAGACAATATAAGAGACTCCCACCAGGTTGTTTTGTATTTGTTCTGCTGCTGTTGGCAATTATTTCTTCTGAAATACAATTGAAGCTGCTGAAATTAAAGGTTTCCATATTTATTCCCAATCCACAGCTTCCAGGGGAGGCAGAACACCTGGTAAGTCTTATCATTTCTTTAACTGATCATTCTAAAATTGGGTATCTACTGCTAAACACAGTTTGCTTTTGTTTGATGCAAAGCGCTGGGGAAAAAGATAATATTTGAGGAGGATGGAGAAGTTCCACACTGCAGGATTTCAAAAGATGTAGATGATTACGGAGTGCTCGAATGTTGGGAAGCCACTTTGAAGAGGAATGTTAAGTGTGTATTTCATAACCTGTTACTGATTGAAAATCAGACTGTGTCACTACTCAACAAATCACACAGCAAGGAGGGAAAACCTTGGACACACCTTCAGAAATTCATTGTGACATTTATTTCTG
Seq C2 exon
CTCTGTCTTTGCTAGAAGTAGCTCTGCGCCTGGAGAATGGTGGCAACCGATGTGAGGGCCGTGTAGAAATGTTTTACAGAGGACAGTGGGGAACAGTCTGTGATGATCGGTGGGACATCGAGGATGCTCGTGTTGTCTGCAGACAGCTGGGCTGTGGGCAGCCCATCTCAGCACCAGGAGATGCCCAGTTTGGGGAAGGCTCTGGGGTTATTTTCCTGGATGAGGTGCAGTGCAAAGGGAATGAAGCTTATGTATGGGAATGCTCCCACAGCGGTTGGTCAAGACACAACTGTGGCCACAATGAAGATGCCAGTGTTGTCTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCCACACATAACTGCAG
R:
GCCACAGTTGTGTCTTGACCA
Band lengths:
349-1300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]