GgaINT0043104 @ galGal3
Intron Retention
Gene
ENSGALG00000009588 | DMBT1
Description
NA
Coordinates
chr6:32921929-32922865:+
Coord C1 exon
chr6:32921929-32922240
Coord A exon
chr6:32922241-32922841
Coord C2 exon
chr6:32922842-32922865
Length
601 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TATTTATTCCCAATCCACAGCTT
3' ss Score
6.67
Exon sequences
Seq C1 exon
AGGTGTCCATGAGGCTGATAAATGGCAGAAACAGATGCGAAGGGCGGGTCGAAGTCTACTATAAGGGAAGCTGGGGGACCGTATGTGACGATTTCTGGGACATAAATGATGTGCAGGTCGTGTGCAGGCAGCTGGGATGTGGAGATGCTCTCTCTGCACTGGGAAAAGCACATTTCAATCCAGGGGCAGGGGACATTTTCCTGGATGATGTGCAGTGCCATGGAAATGAATCCTACCTGTGGGAATGCTCTCACAGAGGATGGGCCACACATAACTGCAGGCACAGAGAAGATGCCGGTGTGCGTTGCTCAG
Seq A exon
GTACAAGTGGAATGGTTCTATTTATTTAAGTAAAACTCTGCACTGCATAAATTGAGAATCTTGTCATCAGCCTGAGGCAAGGGCAATAGCAACTAAGACAATAGAGCTGTACTTAGAAGTATGGTGAGGCAGAAATCAAGAAGTCAACTGCTTCTCTTTCTGTTTTCCTCCATGTATCTTCTGGTATGGGATGCTCGGAAGATGCTCCTGGTGGTCAGTCAGTGACACTGATGTGAGTGCAGAGAGAAGGAATGTTGTGTTCTATGCAGGATACCAGAGGAGGAAATACTTGGTGGCATGGTAGATACCTCACGCTTTGGGCTTCGCAGGCATGGCACTCCCACAGGAATTTATTTTTAGAAGCCATTCCTAAAGAATCAAATCTCACTCTATCTTTTCAACACAAGCTGAATGTTTTCCTGATTAAGGTAATTAAAGGTAGTACATTAAAAGTAACTTAGTTTTAGAACAAATCAGACAATATAAGAGACTCCCACCAGGTTGTTTTGTATTTGTTCTGCTGCTGTTGGCAATTATTTCTTCTGAAATACAATTGAAGCTGCTGAAATTAAAGGTTTCCATATTTATTCCCAATCCACAG
Seq C2 exon
CTTCCAGGGGAGGCAGAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009588:ENSGALT00000015621:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=96.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTCCATGAGGCTGATAA
R:
AGGTGTTCTGCCTCCCCTG
Band lengths:
335-936
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]