HsaINT0030803 @ hg38
Intron Retention
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7482966-7483675:-
Coord C1 exon
chr12:7483367-7483675
Coord A exon
chr12:7483005-7483366
Coord C2 exon
chr12:7482966-7483004
Length
362 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCTTTCTTTTCTCCTACAGATA
3' ss Score
12.94
Exon sequences
Seq C1 exon
ACAAGATAAGACTTCAGGAAGGACCCACTTCCTGTTCTGGACGTGTGGAGATCTGGCATGGAGGTTCCTGGGGGACAGTGTGTGATGACTCTTGGGACTTGGACGATGCTCAGGTGGTGTGTCAACAACTTGGCTGTGGTCCAGCTTTGAAAGCATTCAAAGAAGCAGAGTTTGGTCAGGGGACTGGACCGATATGGCTCAATGAAGTGAAGTGCAAAGGGAATGAGTCTTCCTTGTGGGATTGTCCTGCCAGACGCTGGGGCCATAGTGAGTGTGGGCACAAGGAAGACGCTGCAGTGAATTGCACAG
Seq A exon
GTAAGTGCCAGAAGCCTGGATTGAGCTTGGAATCTCTGGCAGCAAAGAGGGGTTGGGCAGTGATGTGTGTTGTGTAAAAACCGGATTTATCAGCACAGGGATCTGGTGGGGATTCTCAGAGAATCATAATGTCTCTACTGAAAGAATGATGAAAACAATTGTTATACAACGGCCTTCACCAAGGAGACACATACAACCTATATTCCCTGTGCAGAGAAAGAAAGACTAGAGGACTCTAGTTTTAGGTGGGAAAGAGTCATATACTTGGTTGAGAGGTACTAAGGGGTCAGACAAGGAAATCAGAAGGCTTGTTCTATATATCATGCAAAGAATTAACCCTCTCTCTTTCTTTTCTCCTACAG
Seq C2 exon
ATATTTCAGTGCAGAAAACCCCACAAAAAGCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575:ENST00000359156:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.505
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=100.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGACTTCAGGAAGGACCCACT
R:
CTGTTGTGGCTTTTTGTGGGG
Band lengths:
342-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development