HsaINT0030803 @ hg19

Intron Retention

Gene

ENSG00000177575 | CD163

Description

CD163 molecule [Source:HGNC Symbol;Acc:1631]

Coordinates

chr12:7635562-7636271:-

Coord C1 exon

chr12:7635963-7636271

Coord A exon

chr12:7635601-7635962

Coord C2 exon

chr12:7635562-7635600

Length

362 bp

Sequences

Splice sites

5' ss Seq

CAGGTAAGT

5' ss Score

10.86

3' ss Seq

CTCTTTCTTTTCTCCTACAGATA

3' ss Score

12.94

Exon sequences

Seq C1 exon

ACAAGATAAGACTTCAGGAAGGACCCACTTCCTGTTCTGGACGTGTGGAGATCTGGCATGGAGGTTCCTGGGGGACAGTGTGTGATGACTCTTGGGACTTGGACGATGCTCAGGTGGTGTGTCAACAACTTGGCTGTGGTCCAGCTTTGAAAGCATTCAAAGAAGCAGAGTTTGGTCAGGGGACTGGACCGATATGGCTCAATGAAGTGAAGTGCAAAGGGAATGAGTCTTCCTTGTGGGATTGTCCTGCCAGACGCTGGGGCCATAGTGAGTGTGGGCACAAGGAAGACGCTGCAGTGAATTGCACAG

Seq A exon

GTAAGTGCCAGAAGCCTGGATTGAGCTTGGAATCTCTGGCAGCAAAGAGGGGTTGGGCAGTGATGTGTGTTGTGTAAAAACCGGATTTATCAGCACAGGGATCTGGTGGGGATTCTCAGAGAATCATAATGTCTCTACTGAAAGAATGATGAAAACAATTGTTATACAACGGCCTTCACCAAGGAGACACATACAACCTATATTCCCTGTGCAGAGAAAGAAAGACTAGAGGACTCTAGTTTTAGGTGGGAAAGAGTCATATACTTGGTTGAGAGGTACTAAGGGGTCAGACAAGGAAATCAGAAGGCTTGTTCTATATATCATGCAAAGAATTAACCCTCTCTCTTTCTTTTCTCCTACAG

Seq C2 exon

ATATTTCAGTGCAGAAAACCCCACAAAAAGCCACAACAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000177575-CD163:NM_203416:12

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=NA C2=0.405

Domain overlap (PFAM):

C1:

PF0053013=SRCR=WD(100=100.0),PF0168214=DB=PU(60.3=90.5),PF135841=BatD=PU(18.5=40.5),PF063657=CD34_antigen=PU(8.7=21.4),PF066977=DUF1191=PU(28.4=69.0),PF151021=TMEM154=PU(17.0=35.7),PF118373=DUF3357=PU(8.6=16.7),PF097774=OSTMP1=PU(13.9=26.2)

A:

NA

C2:

PF0168214=DB=FE(19.0=100),PF135841=BatD=FE(13.0=100),PF063657=CD34_antigen=FE(11.7=100),PF066977=DUF1191=FE(11.8=100),PF151021=TMEM154=FE(13.6=100),PF118373=DUF3357=FE(14.8=100),PF097774=OSTMP1=FE(15.2=100),PF0769011=MFS_1=PU(1.4=7.7)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSP00000352071