BtaEX0000903 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:G3X7F3]
Coordinates
chr16:5937902-5942607:-
Coord C1 exon
chr16:5942492-5942607
Coord A exon
chr16:5941689-5941862
Coord C2 exon
chr16:5937902-5938011
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTCATTTCTTCCCAGGAC
3' ss Score
9.09
5' ss Seq
TAAGTATAG
5' ss Score
-4.2
Exon sequences
Seq C1 exon
GCTGTATGCACACGGCACAAAGTTAAGTTATACTTGTGAAGAAGGCTTCAAGATATCTGGAAATAATGTGATAATATGCCAAATGGGAAAGTGGAGCTCTCCACCTCAGTGTGTAG
Seq A exon
GACTTCCTTGTGGACTTCCACCTTATATTCAGAATGGTGTTGTATCTCACAAGAAAGACAGATACCAATATGGAGAAGAAGTTACTTACAACTGTGATGAAGGGTTTGGAACTGATGGACCTGCATCTATAAGATGTTTAGGAGGGGAATGGTCTCGTCCACAAGATTGCATAA
Seq C2 exon
ATGTTTCCTGTGTGAATCCACCTCAAGTGGAAAATGCTATTATACACAATCAGAAGTCTAGATATCAGAGTGGAGAGAGAGCACGTTATGAATCCATTGGGAATTATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024647_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.054
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(63.8=92.5)
A:
PF0008415=Sushi=WD(100=91.5)
C2:
PF0008415=Sushi=PU(62.3=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACGGCACAAAGTTAAGT
R:
TCATAATTCCCAATGGATTCATAACG
Band lengths:
218-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development