BtaEX0000934 @ bosTau6
Exon Skipping
Description
Bos taurus cytochrome P450, family 4, subfamily F, polypeptide 2 (CYP4F2), mRNA. [Source:RefSeq mRNA;Acc:NM_001035042]
Coordinates
chr7:8562030-8565556:+
Coord C1 exon
chr7:8562030-8562159
Coord A exon
chr7:8565263-8565396
Coord C2 exon
chr7:8565492-8565556
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTGTCATGGGGTTTCCTCAGGGA
3' ss Score
6.65
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
GCCATGATACCACAGCCAGTGGTCTCTCCTGGATTCTGTACAATCTTGCCAAGCACAAAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAGCTCCTGAAGGATCGTGAGCCTAAAAACATTGAATG
Seq A exon
GGACGACCTGGCCCAGTTGCCCTTCCTAACCATGTGCATCAAGGAGAGTCTGCGATTGCACCCCCCAGTCTCGGTCATCTCCCGCCGCTGTACCCAGGACACTGTACTTCCAGATGGCCGGGTCATCCCCAAAG
Seq C2 exon
GTGTTATCTGCCTCATCAGCATTTTCGGGACCCACCACAACCCATCTGTGTGGCCAGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025748_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.3=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGATACCACAGCCAGT
R:
CTCAGGATCTGGCCACACAG
Band lengths:
195-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development