MmuEX6076832 @ mm9
Exon Skipping
Gene
ENSMUSG00000073424 | Cyp4f15
Description
cytochrome P450, family 4, subfamily f, polypeptide 15 [Source:MGI Symbol;Acc:MGI:2146921]
Coordinates
chr17:32837150-32839135:+
Coord C1 exon
chr17:32837150-32837279
Coord A exon
chr17:32838849-32838982
Coord C2 exon
chr17:32839071-32839135
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGCTGTGTTCCTTAGGGA
3' ss Score
10.75
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
GCCATGACACCACAGCCAGCGGGCTCTCCTGGATCCTGTACAATCTGGCAAGGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAGGAGCTGCTGAGGGATCGAGAGTCTACAGAAATTGAGTG
Seq A exon
GGACGACTTGGCCCAGCTACCCTTCCTGACCATGTGCATCAAGGAGAGTCTGCGGCTGCATCCCCCAGTCACGGTCATTTCCCGTCGTTGTACCCAAGACATTGTGCTCCCAGATGGCCGGGTCATACCTAAAG
Seq C2 exon
GTGTTATCTGCATCATCAATATTTTCGCGACCCATCACAACCCAACTGTGTGGCCTGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073424-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.3=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACACCACAGCCAGC
R:
CTCAGGGTCAGGCCACACAG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: