DreEX6071105 @ danRer10
Exon Skipping
Gene
ENSDARG00000053530 | cyp4f3
Description
cytochrome P450, family 4, subfamily F, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-070410-108]
Coordinates
chr12:48570897-48572501:-
Coord C1 exon
chr12:48572372-48572501
Coord A exon
chr12:48572068-48572201
Coord C2 exon
chr12:48570897-48570961
Length
134 bp
Sequences
Splice sites
3' ss Seq
TGCGCTGTGATTGGCTGAAGGGA
3' ss Score
2.4
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GTCATGACACCACCGCCAGCGCTCTCTCCTGGATCTTCTACAATCTGGCCATGAATCAGGATTATCAGGAGCGCTGCCGAGCTGAAGTCAGAGATCTGCTGGCAGACAGAGACACACACACCATCGGGTG
Seq A exon
GGAGGATCTGAGTCAGCTGACCTTCACCACCATGTGCATCAAGGAGAGTCTGAGGCTTCATTCACCCGTCCTGGCGCTCACCCGATACTACTCTCAGAACATGAAGACGCCAGGAGACTGCGTTATCCCACACG
Seq C2 exon
GATGCCTGTGTTTGATCAGTATTTATGGTGTCCACCGAAACCCTCAAGTCTGGCCGGATCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053530-'11-11,'11-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.1=100)
A:
PF0006717=p450=FE(9.5=100)
C2:
PF0006717=p450=FE(4.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATGACACCACCGCCAG
R:
AGTGGATCCGGCCAGACTTG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]