HsaEX0018332 @ hg19
Exon Skipping
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450, family 4, subfamily F, polypeptide 2 [Source:HGNC Symbol;Acc:2645]
Coordinates
chr19:15990414-15996863:-
Coord C1 exon
chr19:15996734-15996863
Coord A exon
chr19:15990574-15990707
Coord C2 exon
chr19:15990414-15990478
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGGCTGGGGTGTTTCCTTAGGGA
3' ss Score
6
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
GCCATGACACCACGGCCAGTGGTCTCTCCTGGGTCCTGTACCACCTTGCAAAGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAACTTCTGAAGGACCGTGAGCCTAAAGAGATTGAATG
Seq A exon
GGACGACCTGGCCCATTTGCCCTTCCTGACCATGTGCATGAAGGAGAGCCTGCGGCTGCATCCCCCAGTCCCGGTCATCTCCCGCCATGTCACCCAGGACATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAG
Seq C2 exon
GCATTATCTGCCTCATCAGTGTTTTCGGAACCCATCACAACCCAGCTGTGTGGCCGGACCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(82.5=97.1)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACACCACGGCCAG
R:
CTCAGGGTCCGGCCACAC
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)