HsaEX0018332 @ hg38
Exon Skipping
Gene
ENSG00000186115 | CYP4F2
Description
cytochrome P450 family 4 subfamily F member 2 [Source:HGNC Symbol;Acc:HGNC:2645]
Coordinates
chr19:15879346-15886053:-
Coord C1 exon
chr19:15885924-15886053
Coord A exon
chr19:15879764-15879897
Coord C2 exon
chr19:15879346-15879428
Length
134 bp
Sequences
Splice sites
3' ss Seq
GGGCTGGGGTGTTTCCTTAGGGA
3' ss Score
6
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
Exon sequences
Seq C1 exon
GCCATGACACCACGGCCAGTGGTCTCTCCTGGGTCCTGTACCACCTTGCAAAGCACCCAGAATACCAGGAGCGCTGCCGGCAGGAGGTGCAAGAACTTCTGAAGGACCGTGAGCCTAAAGAGATTGAATG
Seq A exon
GGACGACCTGGCCCATTTGCCCTTCCTGACCATGTGCATGAAGGAGAGCCTGCGGCTGCATCCCCCAGTCCCGGTCATCTCCCGCCATGTCACCCAGGACATTGTGCTCCCAGACGGCCGGGTCATCCCCAAAG
Seq C2 exon
GTCTACGACCCCTTTCGCTTTGACCCAGAGAACATCAAGGAGAGGTCACCTCTGGCTTTTATTCCCTTCTCGGCAGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186115_MULTIEX2-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(82.5=97.1)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=PD(12.5=17.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACACCACGGCCAG
R:
GCCGAGAAGGGAATAAAAGCCA
Band lengths:
203-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development