RnoEX6030757 @ rn6
Exon Skipping
Gene
ENSRNOG00000029478 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:RGD Symbol;Acc:1308796]
Coordinates
chr7:14505613-14512836:+
Coord C1 exon
chr7:14505613-14505742
Coord A exon
chr7:14510612-14510745
Coord C2 exon
chr7:14512772-14512836
Length
134 bp
Sequences
Splice sites
3' ss Seq
CACAGTTCCTCTCTCTTCAGGGA
3' ss Score
9.5
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
Exon sequences
Seq C1 exon
GTCATGACACAACATCTAGTGGGCTGTCGTGGGCGCTGTTCAACCTGGCGAAGTATCCGGAGTACCAGGACAAGTGCCGGGAAGAGATCCAAGAAGTCATGAAAGGCCGAGAGCTGGAAGAGCTGGACTG
Seq A exon
GGATGACCTGACGCAGTTGCCCTTCACCACCATGTGTATCAAGGAGAGCCTTCGCCAGTTCCCGCCCGTGACCCTCATCTCTCGTCGCTGCACAGAGGACATCAAGCTGCCCGACGGACGCATCATTCCCAAAG
Seq C2 exon
GAATTATCTGCTTGGTCAGCATCTACGGGACCCACTACAACCCCTTAGTGTGGCCTGACTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029478-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGACACAACATCTAGTGGGC
R:
CTTAGAGTCAGGCCACACTAAGG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]