BtaEX6037230 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047933 | CYP4F22
Description
cytochrome P450, family 4, subfamily F, polypeptide 22 [Source:HGNC Symbol;Acc:HGNC:26820]
Coordinates
chr7:8631319-8634089:-
Coord C1 exon
chr7:8633960-8634089
Coord A exon
chr7:8632291-8632424
Coord C2 exon
chr7:8631319-8631383
Length
134 bp
Sequences
Splice sites
3' ss Seq
CACTGTTCCACATTCCCCAGGGA
3' ss Score
7.75
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
GTCATGACACAACTTCCAGTGGGCTGTCATGGGTACTGTTCAACTTGGCCAAGTATCCAGAGTACCAGGAGAAGTGCCGAGAAGAGATCCAGGAAGTCATGAAAGGCCGGGAGCTGGAGGAACTGGAGTG
Seq A exon
GGACGACCTGACCCAACTGCCCTTCACCACCATGTGCATCAAGGAGAGCCTCCGCCAGTTCCCACCTGTGACCCTGGTCTCCCGCCGCTGCACGGAGGACATCAAGCTCCCAGACGGACGCATCATCCCCAAAG
Seq C2 exon
GAATCATCTGCCTGGTTAGCATCTATGGGACCCACTATAACCCTGCAGTGTGGCCTGACTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047933-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.2=100)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGACACAACTTCCAGTGGG
R:
CTTGGAGTCAGGCCACACTG
Band lengths:
194-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]