GgaEX6044757 @ galGal3
Exon Skipping
Gene
ENSGALG00000020687 | E1C120_CHICK
Description
NA
Coordinates
chr8:22599882-22600467:+
Coord C1 exon
chr8:22599882-22599895
Coord A exon
chr8:22600178-22600311
Coord C2 exon
chr8:22600403-22600467
Length
134 bp
Sequences
Splice sites
3' ss Seq
AGCATCCCCTGCTTCTGCAGGGA
3' ss Score
7.92
5' ss Seq
AAGGTCTGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
GACACCATTCAGTG
Seq A exon
GGAAGACCTGGGGAAGATGACCTACAGCACCATGTGCATCAAGGAGAGCCTTCGCCTCTACCCACCGGTGCCTGGCGTGTCCCGGCAGCTCAGCAAGCCCATCACCTTCCATGATGGTCGCACCCTGCCAGAAG
Seq C2 exon
GCACTATCACTGCAATAAGCATTTATCTCATTCACCGAAATCCCTTGGTATGGAAGGATCCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020687-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(2.6=100)
A:
PF0006717=p450=FE(29.2=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]