RnoEX6022841 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134509844-134513836:-
Coord C1 exon
chr5:134513646-134513836
Coord A exon
chr5:134511067-134511200
Coord C2 exon
chr5:134509844-134509908
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTGTGTTGCTGGCAGGGA
3' ss Score
7.73
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGAAAGTGGGATCAAGCTGTCAGATGCAGAGCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTACCCTGAGCACCAGCAGCTATGTAGGGAGGAGGTCCGTGGGATCCTAGGAGACCAAGACTCCTTCCAATG
Seq A exon
GGATGATCTGGCCAAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTATACCGCCAGCTCAACAAGCCAGTCACCTTCGTGGATGGCCGCTCTCTACCTGCAG
Seq C2 exon
GCAGCCTGATCTCTCTGCACATCTACGCCCTCCACAGGAACAGTACTGTGTGGCCTGATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'12-15,'12-12,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATCAAGCTGTCAGATGCA
R:
TGGATCAGGCCACACAGTACT
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]