MmuEX7002485 @ mm10
Exon Skipping
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115625824-115628859:-
Coord C1 exon
chr4:115628669-115628859
Coord A exon
chr4:115626807-115626940
Coord C2 exon
chr4:115625824-115625888
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTCCTGTGTTGCTGGCAGGGA
3' ss Score
7.91
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GATGAAAGTGGGATCAAGTTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTCGAAGGCCACGACACCACCACTAGTGGTATCTCTTGGTTTCTCTACTGCATGGCCCTTTATCCTATGCACCAGCAGCGATGTAGGGAGGAGGTCCGTGAGATCCTAGGGGACCGGGACTCCTTCCAGTG
Seq A exon
GGATGATCTGGCCCAGATGACCTACCTGACCATGTGCATGAAGGAGTGCTTCCGCCTCTACCCACCTGTACCCCAAGTGTACCGCCAGCTCAGCAAGCCAGTAACCTTTGTGGATGGCCGCTCTCTACCTGCAG
Seq C2 exon
GCAGCCTGATCTCTCTGCACATCTATGCCCTCCATCGGAACAGTGCTGTGTGGCCTGACCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713-'16-26,'16-24,20-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
PF0006717=p450=FE(11.7=100)
C2:
PF0006717=p450=FE(4.6=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGATCAAGTTGTCAGATGC
R:
CAGGCCACACAGCACTGTTC
Band lengths:
242-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types