HsaEX0018325 @ hg38
Exon Skipping
Gene
ENSG00000142973 | CYP4B1
Description
cytochrome P450 family 4 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2644]
Coordinates
chr1:46815074-46869115:+
Coord C1 exon
chr1:46815074-46815264
Coord A exon
chr1:46817048-46817181
Coord C2 exon
chr1:46868830-46869115
Length
134 bp
Sequences
Splice sites
3' ss Seq
TCTGGTTGTGTTGCTGGCAGGGA
3' ss Score
6.33
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GATGAAGATGACATCAAACTGTCAGATGCAGACCTCCGGGCTGAAGTGGACACATTCATGTTTGAAGGCCATGACACCACCACCAGTGGTATCTCCTGGTTTCTCTACTGCATGGCCCTGTACCCTGAGCACCAGCATCGTTGTAGAGAGGAGGTCCGCGAGATCCTAGGGGACCAGGACTTCTTCCAGTG
Seq A exon
GGATGATCTGGGCAAAATGACTTATCTGACCATGTGCATCAAGGAGAGCTTCCGCCTCTACCCACCTGTGCCCCAGGTGTACCGCCAGCTCAGCAAGCCTGTCACCTTTGTGGATGGCCGGTCTCTACCTGCAG
Seq C2 exon
GCAAGCTAAGAGCCAAATCATGAATGAACTACCATTCACAACTGCCACAAAAGAATAGAATATCTAGGAATACATCTAACAATGGAAGTGAAGGACCTTTTTGAGAAGAACTACAAACCACTGCTCAGAGAAATCTGAGAGGACACAAACAAGTGGGAAAGCATTCCATGCTCATGGATAGGAAGAATCAATATCATGAAAATGGCCATGTTGCTCAAAGCAATTTATGGATTCAATGCTGTTCCCATTAAACTACTATTGAGATTCTTCATAGAATTAGAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000142973_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.8=100)
A:
PF0006717=p450=FE(10.2=100)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTCTCTACTGCATGGCCC
R:
GCTTTCCCACTTGTTTGTGTCC
Band lengths:
256-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development