BtaEX0000983 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14182047-14187616:+
Coord C1 exon
chr6:14182047-14184228
Coord A exon
chr6:14184404-14184435
Coord C2 exon
chr6:14187543-14187616
Length
32 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGCATGTTATTGCAGGTG
3' ss Score
8.73
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGAAAACAACCTATTTTCAGAACAGGCTCAGACTGTTCTGGGAAGTGACTTAGACAAAACAACCAATCAGGTTTTACCGTTAACCTCTAGCAGTGGCAACAGTATCCAGATATTAAATGCCAAACAGATTCACTCCAAAGAATGTACTGCACTTGATAAATCACAGACCCAAGGTTCCAATTCTTTGTGTTACCCTTTGGGAAAAACACATATTTCCAAAGACACAGAATCACATATTTCTGAAGCTGAAGAGGTGGGAAGGAGTCGAGGTTTATCCCAGGACCATATTGATGTAGAAACTTCTGGAGAAAACAAACAATATGGGAATAATCTTAGAAATTCTTCAGAAATTTCTGGATTAGTAAATAGCATTTCTCTCTTAAAATCATTGACTGAACACAGTACGGCTTTGGAAGGCTTGGAAGTATTGAAAAAGAAAAATACCTCCTTGAAACAACAAGGAACTCTGCAGACATATGAGCCAGATAGCAGTCCTGAAG
Seq A exon
GTGTGTCTCCAGGGCAGATTCCTTCCTAACAG
Seq C2 exon
TTGGGAAACCATTGACTACAATAGTTTCACAAGCTATACCAAAGTCTCCTCATCTGAACCAGGATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000049376fB170
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAAGGAACTCTGCAGACA
R:
AGGATCCTGGTTCAGATGAGGA
Band lengths:
115-147
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development