BtaEX0000981 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14179654-14187616:+
Coord C1 exon
chr6:14179654-14179713
Coord A exon
chr6:14181191-14181376
Coord C2 exon
chr6:14187543-14187616
Length
186 bp
Sequences
Splice sites
3' ss Seq
GTTTATTCTTCAAAATTTAGGTT
3' ss Score
7.66
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCAATTTTATATGATGACAAAGGAGGATGTTTGGAGAGTTTATTTCTTAAGTGCCTTGAG
Seq A exon
GTTAAACCTGGAGATGATTTAGAAAGTGATCGGTACTTAATCACAGTTGAGGAGGTTAAAGTTGCTGGAAGCACAGCTGTCAAGCAGGATGTCATTAAAGAAGCACCAGCATTAAATTCAAAGAGGTTTATGTCTTCTGGCCGATCCCTTGGGTGTCAGCCTGCTGGTTTAAAAAGGAAGTTCACT
Seq C2 exon
TTGGGAAACCATTGACTACAATAGTTTCACAAGCTATACCAAAGTCTCCTCATCTGAACCAGGATCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(23.8=100)
A:
PF103824=DUF2439=PD(33.8=43.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATTTTATATGATGACAAAGGAGG
R:
TGAGGATCCTGGTTCAGATGAGG
Band lengths:
130-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development